| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2808 |
|---|
| Symbol | |
|---|
| ID | 5710659 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2965958 |
|---|
| End bp | 2966524 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641268734 |
|---|
| Product | putative thioredoxin |
|---|
| Protein accession | YP_001534142 |
|---|
| Protein GI | 159045348 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG2143] Thioredoxin-related protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.234004 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGACGTT TTCTGACACT CTGCGCCGCG GCGCTGCTCT GGACGCTGCC GGGACTGGCC
GCGCAGCTCG GGGATGACGG GCTGCACAAG ACCGCCTGGA TGAAAGACAC GTTCAAGGAC
CTGCGCGAGG ATCTCGCCGA GGCCAATGCC GAGGGCAAGC GCCTGGCGCT GATCATCGAG
CAGCGCGGCT GCATCTATTG CGACAAGATG CACAAGGAGG TGTTCCCCAT CCCCGAGATC
GACGCGCTGC TGAACGACCA GTTCTTCGTG GTGCAGATCA ACATGTTCGG CGATGTGGAG
ATCACCGATT TCGACGGCGA GGCGCTGGCC GAGAAGGACG CCGTGCGCAA ATGGGGGGCG
CTCTTCACGC CCACCTTGAT GTTCTTTCCC GAAGAGGTGC CCGAGGGCGC CAGCGCCGCC
CAGGCGGCCG TCGCCACCAT CCCCGGGGCC TTCGGGAAAT GGACCACGCT CAACATGCTG
ACCTGGATTC TCGAAGAGGG CTATACCACC GACGAGCCGT TCCAGAAGTA CCACGCCCGC
AAGTTCATGG AGCAAAATAC CGAGTAA
|
|---|
| Protein sequence | MGRFLTLCAA ALLWTLPGLA AQLGDDGLHK TAWMKDTFKD LREDLAEANA EGKRLALIIE
QRGCIYCDKM HKEVFPIPEI DALLNDQFFV VQINMFGDVE ITDFDGEALA EKDAVRKWGA
LFTPTLMFFP EEVPEGASAA QAAVATIPGA FGKWTTLNML TWILEEGYTT DEPFQKYHAR
KFMEQNTE
|
|---|
| |