Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_2436 |
Symbol | |
ID | 5714092 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 2577535 |
End bp | 2579637 |
Gene Length | 2103 bp |
Protein Length | 700 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641268359 |
Product | short chain dehydrogenase |
Protein accession | YP_001533771 |
Protein GI | 159044977 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only [S] Function unknown |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [COG3347] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR02632] rhamnulose-1-phosphate aldolase/alcohol dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTGAAAT CATTGGAAAC GCAGCTGCTT GAAAGTCGGT GGGACGACGA GGTCGCCAAG GGCATGAGCG AATCGGAACT GTTGCTCTAT CGGTCGAACA TCCTCGGCGC CGACAAGCGG GTGACGAATT ACGGCGGTGG CAACACATCG GCCAAGGTGA TGGAGGCCGA CCCCCTGACC GGCGCGCAGG TCGAGGTGCT TTGGGTCAAA GGGTCCGGCG GGGATATCGG CTCGATCAAG ATGGACGGGT TCGCGACGCT TTACATGGAC AAGCTGCGCG CGCTGAAGGG GCTGTATCGC GGGGTCGCGT TCGAGGATGA GATGGTCAGC TACCTGCCGC ATTGCACCTT CCGGCTGAAC CCGCGCGCGG CCTCCATCGA CACGCCCCTG CACGCTTACG TCCCGCGCAA GCACGTCGAT CACGTCCATG CCGATGCGAT CATCGCCATC GCCGCCTCCG ACAATTCGAA GGAGCTCACG CAGGAGATTT TCGGAAACCG GATCGGCTGG CTGCCGTGGA AGCGGCCCGG CTTCGAGCTG GGCCTGTGGT TGGAGAAATT CTGCCGGGAG AACCCCGAGG CGGATGGTGT CGTGCTCGAA AGTCACGGGC TGTTCACCTG GGCCGACACC GCGAAGGAGT GCTACGATCA GACGATCGAC GTGATCAACG TGGCGACCCG GTGGCTCGCC GAGCGCAGCG CGGGTGTCCC GGCCTTCGGC GGGGCGATCC ACGAGAGCCT TCCGGCCGCG GCCCGCCGCG AGGTCGCCGC CCGGCTGATG CCCGCCATCC GCGGTTTCGT GTCGGACAAT CAGCACATGG TTGGCCATTT CAATGACAGC GACGCGGTGC TGGAATTCGT GAACGCGCGG GACATGGAGG CGCTCGCGGC GTTGGGCACC TCCTGCCCGG ACCATTTCCT GCGCACGAAG ATCCGGCCCC TCGTGGTGCC GTTCGATCCG GCGCAGAATA ACATCCTGGC GGTGCTGTCG GAGCTGCCGG ACCAGGTTGC GGCTTACCGT GAGGCCTATG CCGCCTATTA CGCGCGCTGC AAACATGACG ACAGCCCGGC CCTGCGCGAC CCGAACGCGG TGGTCTATCT GGTGCCCGGG GTGGGCATGA TCACCTTTGC CAAGGACAAG GCCACGGCCC GGATATCGGG CGAGTTCTAT GTCAACGCGA TCAACGTGAT GCGCGGCGCG TCGGCGGTCA GCACGTACCA GGGCCTGCCG GAACAGGAAG CTTTCGATAT CGAGTACTGG TTGCTGGAAG AGGCCAAGCT GCAGCGCATG CCGAAACCGA AATCTCTTGC CGGCCGCGTG GCCCTCGTCA CCGGCGGTGC GGGCGGGATC GGGGCGGCCA CGGCCGAGCG GTTCCTGGCC GAAGGTGCCT GCGTGGTTCT GGCGGATATC AACGAGGACA GCCTGGCATC GACGCAGGAG AGGTTGTCGG AGCGGTTTGG CGCGGATGTC GTCCGCTCGG TCGTCATGAA CGTGACGCGC GAAGAGGCCG TCGCGGCGGC CTTTGCGGAG GCGTCGGTGG AATTCGGCGG GGTGGATATC CTGGTGTCCA ACGCCGGGAT TGCCTCCTCC GCGCCGATCG AGGAGACGTC GCTGGCGCTG TGGAACAAGA ACATGGACAT TCTGTCCACC GGTTACTTCC TGGTCAGCCG CGCGGCGTTC AAGCTGATGC GGGTGCAGGA CATGGGCGGC GCGGTGGTGT TCGTGGCCTC CAAGAACGGA TTGGCCGCGT CACCGAATGC GGCGGCCTAC TGCACGGCCA AGGCGTCGGA AATCCATCTG GCCCGGTGCC TGGCCCTTGA AGGCGCGGAG GCCGGCATCC GCGTCAACGT GGTGAACCCG GACGCGGTAC TGCGGGGCTC CAAGATCTGG GAGGGCGACT GGCTGGAACA GCGCGCGGGC ACCTATGGCA CCGACAAGGA CGGGCTGGAG GAGATGTATC GCCAACGCTC TCTGCTCAAG CGGTCGGTTC TGCCGGAAGA TATCGCCGAG GCCTGCTATT TCTTCGCCGC GGACGCGTCG TCGAAGTCCA CGGGCAACAT CATCAACGTG GACGCGGGCA ATGTGCAAGC GTTCACACGC TAG
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Protein sequence | MLKSLETQLL ESRWDDEVAK GMSESELLLY RSNILGADKR VTNYGGGNTS AKVMEADPLT GAQVEVLWVK GSGGDIGSIK MDGFATLYMD KLRALKGLYR GVAFEDEMVS YLPHCTFRLN PRAASIDTPL HAYVPRKHVD HVHADAIIAI AASDNSKELT QEIFGNRIGW LPWKRPGFEL GLWLEKFCRE NPEADGVVLE SHGLFTWADT AKECYDQTID VINVATRWLA ERSAGVPAFG GAIHESLPAA ARREVAARLM PAIRGFVSDN QHMVGHFNDS DAVLEFVNAR DMEALAALGT SCPDHFLRTK IRPLVVPFDP AQNNILAVLS ELPDQVAAYR EAYAAYYARC KHDDSPALRD PNAVVYLVPG VGMITFAKDK ATARISGEFY VNAINVMRGA SAVSTYQGLP EQEAFDIEYW LLEEAKLQRM PKPKSLAGRV ALVTGGAGGI GAATAERFLA EGACVVLADI NEDSLASTQE RLSERFGADV VRSVVMNVTR EEAVAAAFAE ASVEFGGVDI LVSNAGIASS APIEETSLAL WNKNMDILST GYFLVSRAAF KLMRVQDMGG AVVFVASKNG LAASPNAAAY CTAKASEIHL ARCLALEGAE AGIRVNVVNP DAVLRGSKIW EGDWLEQRAG TYGTDKDGLE EMYRQRSLLK RSVLPEDIAE ACYFFAADAS SKSTGNIINV DAGNVQAFTR
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