Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_2048 |
Symbol | |
ID | 5713043 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 2167769 |
End bp | 2169508 |
Gene Length | 1740 bp |
Protein Length | 579 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641267970 |
Product | hypothetical protein |
Protein accession | YP_001533386 |
Protein GI | 159044592 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1463] ABC-type transport system involved in resistance to organic solvents, periplasmic component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.715666 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGGAAACGC GTGCCAATTA CATCCTGATC GGGCTTTTCA CGCTGCTGGG CATCCTCGGC ATGATGGCCT TTTTCCTGCT GTTCGCGCGG GTCGAGCTGG ACCGGCAATT CGCCTATTAC GACATCCGGT TTTCCTCGGT CTCTGGGTTG AGCGAGGCGT CGGACGTACG GTTCAGCGGC TTGCCCGTGG GGCAGGTGGT CGATGTACGG CTGGCCCCGG AGCAGGACGG CTCGATCGTC GTGCGGGTTG AGGTGAATGC CGACACGCCG GTGCGCACGG ACAGTGTTGC GACGATCGAG GCTCAGGGGG TCACGGGCGT GTCCTTCGTC GGGATCAGTG GGGGAACGCC GGACGCGCCG CTTCTGGTGG CGGCCACCGA CGCGCAGGTG CCCGAGATCG AGGCCGGGCG CTCGGTGCTG CAGACCCTGT CTGAGGACGC GCCCGAGCTG ATCACCGAGG CGCTGCAGAT CGTGCAGGAG GTCAGCGCAC TGCTGACCGA CGACAATCGC AACCTGCTGC GCAATATCCT GGTCAATACC GAGGCGGCCT CGGAAGAATT CGCCAGCGCG TTGGAGAATT TCTCCGGCGT GGCCGATACG GTGAACGCCT TTGCCGACCA GATCAGCCGG TTCAACGCCA CGCTCGATAC CCTGACGGGA GAGATCAACG ACGTGCTTTC CACGGCCGAC ACGACGCTGG CCTCCATCGG AGCCTTGTCG GAGGAGACGC GCCGGATGGT CCTCGACGGT GAGGAGGTGC TGTCGACGCT CGACGATTCC CTGGGGGCCG CGCAGACCTA TATCGAAGGT GATTTGGCCG GTGCGACCGA GGAGGCCCGG GCATTGATGG CCGATCTGCG GGCGCAGGCC GACACCCTGG GCACCGAGGC TGCGGCGCTG ATCGAGGGGT TCGGCGCGAC CGGCGACGTG GCCACGGCCC GGCTTACGGA GTTTGCGGGC ACGCTGGCGG CGGTGGATCG GCTGGTCGCC TCACTGGAGG CAACCTCGGG CGAGGTCCAG GTGGCCGTGC GGCGCATCGA CGGGCTGGTT GCGGAAGAGG GCGCACCGCT GCTGAGCGAG ACGCGCGCGC TGGTCGCAAC GGCGCAGGCG GCGATGGAGG CGGTTAACGC GGTGGCGACC GTGGACATGC CCGCCATCGT GGCCGATATC CGCGCCGCGA CCGACACCAC GACCCGGGTG GTCGCCGAGG TAGGCGAGAA CCTGAGCGGC GCGTCGGGCC GGGTGGAGGC GCTGATCGTG TCAGCGCACT CCACCCTCGC CGATGTCACC ACCACCTTCC GCAATGCCAA CGAGACCCTC ACGGCGGTGA ACACCGCGAT GGAGACTGGC GACAGCGCCC TGCGCGCCGC CGAGAGCGCC TTTACCTCCG CCGATCGGGT GATGAGCGAG GATCTCGACG GGGTCATCGC CGCGCTGGAG AGCACGCTTG GCTCGCTGAC CGGGGCGGTG GACAGCGTAG CAGAGGACCT GCCGCTGATC AGTTCGGATC TGCGCAGCGC CAGCGATGCC GCCGCGCGGG CCTTTGCCGA GGTGGAGGCG CTGGCCGAGG CGGCCGGGCC CAGGCTGGAG ACTTTCGCGA CCACCGGCCT GCCGCTTTAT TCCCGGCTCG CGCAGGAAGC GCGCGTGCTG GTCGAAAACC TCGACCGGCT GACCAACCAG ATCAGCCGCG ATCCCGCGCG GTTCATCCTC AACCCCAACA CCCCGGAATT CAGAAGGTAG
|
Protein sequence | METRANYILI GLFTLLGILG MMAFFLLFAR VELDRQFAYY DIRFSSVSGL SEASDVRFSG LPVGQVVDVR LAPEQDGSIV VRVEVNADTP VRTDSVATIE AQGVTGVSFV GISGGTPDAP LLVAATDAQV PEIEAGRSVL QTLSEDAPEL ITEALQIVQE VSALLTDDNR NLLRNILVNT EAASEEFASA LENFSGVADT VNAFADQISR FNATLDTLTG EINDVLSTAD TTLASIGALS EETRRMVLDG EEVLSTLDDS LGAAQTYIEG DLAGATEEAR ALMADLRAQA DTLGTEAAAL IEGFGATGDV ATARLTEFAG TLAAVDRLVA SLEATSGEVQ VAVRRIDGLV AEEGAPLLSE TRALVATAQA AMEAVNAVAT VDMPAIVADI RAATDTTTRV VAEVGENLSG ASGRVEALIV SAHSTLADVT TTFRNANETL TAVNTAMETG DSALRAAESA FTSADRVMSE DLDGVIAALE STLGSLTGAV DSVAEDLPLI SSDLRSASDA AARAFAEVEA LAEAAGPRLE TFATTGLPLY SRLAQEARVL VENLDRLTNQ ISRDPARFIL NPNTPEFRR
|
| |