| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2044 |
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| Symbol | |
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| ID | 5713039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2162631 |
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| End bp | 2164097 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641267967 |
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| Product | HTH-type transcriptional regulator |
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| Protein accession | YP_001533383 |
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| Protein GI | 159044589 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.411969 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATCA GACCCGAGTC CCTCATCTTC GATCAGGACG GCGAAGGCAC CCGCCAGCAC
CGCATCAAGC GGCAGGTGAT CGACGGTATC CTCAGCGGCC GGTTCAAGCC GGGGGACAAG
ATGCCCTCCA GCCGTGGCCT CGCCCGCCAG CTCGGCGTCA GCCGGATCAC CGTGACCATC
GCCTACACCG ACCTCGTGGC CGACGACTAC CTCGTGGCGC GCGGGCGATC CGGGTACTTC
GTCTCCGACA GCGCCCCCAG CGCGCCCAGC CTGGTGCAGG CCTGCCAGAA CGGCGAGAGC
ATCGTGGACT GGACGCGCCT GATGTCCCAC CGGGAACCGC CGCCCGAGGA GATCGCCCGC
CCCTTCGACT GGCACAGCTT CCCCTACCCG TTCATCTACG GACAGACGGA TCCCCAGCTT
TTCGATCATC GTAATTGGCG GCTCTGCGCG CTCGAGGCGC TCGGCCTGCG GGAATTCGAG
AGCCTGACCG CCGACCATTA TGAGCGGGAC GATCCGAAAC TCGTGGAGTA TATCCAACGC
AACATCCTGC CCCGGCGGGG GATCGCGGCG CGCCCCAACC AGATCCTGAT CACCATGGGC
GCGCAGAACG CGCTCTGGCT CTGTGCGCAA CTTCTGCTCA CCCAGCGGCG CAAGGCGGTG
CTGGAGAACC CCGGCTACCC CAGCCTGCGC CAGATCCTCG GCGCCACACG CTGCCATACC
CAAAGCGTCG ATGTGGACGC AGACGGTCTG GCCCCCGAAA CGCTGCCCGA CGCGCTCGAC
GTGCTCTTCA CCACCGTCAG CCACCAATGC CCCACCAACG CCACCATGCC ACTGGCCCGG
CGCAAGGCGC TGCTGTCCCT GGCCGCCGAA CGCGGCTTCG TGGTGGTGGA GGACGAGTAC
GAGTTCGAGC TGGCTTTCGG GCGCACTGCA ACACCGTCGC TCAAGTCGTT CGACACGCAT
GGCACGGTGA TCTATGTCGG CTCGTTCTCG AAGTCCCTGT TTCCGGGGCT TCGGCTGGGT
TTCATGGTCG CCCCGCACCC CTTCATCGCC GAGGCCCGCC GGTTGCGCGG CACCGTGCTC
CGCCATCCGC CGGGATTGAT TCAGCGGACC ACGGCGAACT TCCTGTCGCG CGGGCATTTC
GATGCGCAGA TCAACCGGAT GCGCAAGGCC TACGAGGTGC GCCGCCGCGC CATGGAAACG
GCGATCGCCG AGACCGGGCT GCAAGTCGCC TCCCAACCCG CCAATGGCGG ATCGAGCCTG
TGGATGCGGG CGCCGGACGG CGTGGATACC GACCTGCTGG CCCGGCGGCT CCGGTCCAAG
GGGGTGGTGA TCGAACCGGG CGCGGCCTTC TTCGACCCCA CCCGCCCTCA GCGCAACTTT
TACCGGCTCG CCTATTCGTC GATCGAGGTG GCCCGCATTC CCCAGGGCAT TCGGCTGATC
GCCGCTGCGC TGGCCGATCT GGACTGA
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| Protein sequence | MDIRPESLIF DQDGEGTRQH RIKRQVIDGI LSGRFKPGDK MPSSRGLARQ LGVSRITVTI
AYTDLVADDY LVARGRSGYF VSDSAPSAPS LVQACQNGES IVDWTRLMSH REPPPEEIAR
PFDWHSFPYP FIYGQTDPQL FDHRNWRLCA LEALGLREFE SLTADHYERD DPKLVEYIQR
NILPRRGIAA RPNQILITMG AQNALWLCAQ LLLTQRRKAV LENPGYPSLR QILGATRCHT
QSVDVDADGL APETLPDALD VLFTTVSHQC PTNATMPLAR RKALLSLAAE RGFVVVEDEY
EFELAFGRTA TPSLKSFDTH GTVIYVGSFS KSLFPGLRLG FMVAPHPFIA EARRLRGTVL
RHPPGLIQRT TANFLSRGHF DAQINRMRKA YEVRRRAMET AIAETGLQVA SQPANGGSSL
WMRAPDGVDT DLLARRLRSK GVVIEPGAAF FDPTRPQRNF YRLAYSSIEV ARIPQGIRLI
AAALADLD
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