| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1964 |
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| Symbol | |
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| ID | 5712958 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2071115 |
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| End bp | 2072833 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641267888 |
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| Product | hypothetical protein |
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| Protein accession | YP_001533305 |
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| Protein GI | 159044511 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3882] Predicted enzyme involved in methoxymalonyl-ACP biosynthesis |
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| TIGRFAM ID | [TIGR01681] HAD-superfamily phosphatase, subfamily IIIC
[TIGR01686] FkbH-like domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.378575 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.035089 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCACGG GATTCGAGGC GATAACGGCG CAGGTCAAGC TGGTGATCTG GGACCTGGAC
GAGACCTTCT GGCAGGGCAC CTTGTCCGAA GGGGGCATTA CGCCGATCCC GGCCCATGCA
GAGATGATCA AGACGCTCGC GGATCGCGGG ATCATGTCGT CGATCTGTTC CAAGAACGAT
TTCGACACCG CCAAGGCGGA GTTGGAGAGG CTCGGCGTCT GGGACTACAT CGTGTTTCCC
CATATCGACT GGACCCCGAA AGGCCAGGCG ATCAAGACCA TGCTGTCGGC CATGGGGTTG
CGGGCGCCGA ACGTGGTGTT TCTCGACGAC AATCACATGA ACCTCGAAGA GGCCGCGTTC
TTCAACGAGG GGCTGATGTG CGTGGATGCG ACCCAGCCGC TCGCCGGGCT GCTCGATCTG
CCGCAGATGA AGGGCAAGGA CGACCGCGCC CATTCCCGAC TGGCCCAATA CAAGATGCTG
GAGACCAAGC AGGCCGCGCA AGCCGAGGGC GCGCTCGACA ACATGGCGTT CCTGCGCCAA
TCGCAGATCC GGGTCGAGAT CCTGACCGAT CTGGAGCCGC ATATGGACCG GGTTCTGGAG
CTGATCAATC GCACGAACCA GCTGAACTTC ACCAAGAATC GGGTGGAGAC GCCGGAGGCG
CGGGCGGAGT TGGACGCGCT CCTGGCAACC TCGGGGGTGC ATGCGGGGCT GGTGCGGGTG
ACGGACCGCT ACGGCGATTA CGGGATCGTG GGCTTCTTTG CCGCGCGGGT GAAATACAGC
GGCACAACCG TGCATCATTT CTGCTTTTCA TGCCGGACGC TCAACATGGG GGTGGAGCAG
TTCGTCTGGC AGCGGATCGG TGCGCCGGAA TTCGACTTCA AAGGCCCGGT GGCAAGCCAG
CTGGACGCAG GCGCGGAGGT GGACTGGATC GCGGAGGCGT CGTCGTCGGA CCAGGTGTTT
TCCGAGCAGG ACGATCGGAC CCTGTGCCTT GTCGGCGGGT GCGACCTGCT GCAGGTGTCG
TTTTACTGCG GCACCAACCG GCATGAATTC GTCAACAAGG AGGATCGCGG ATACCTCGTG
CGCTATGACG ATCCGGGGTT TTTCCTGAAC CCGCGCAAGC CTTTGAAACA TGATCAGACG
TTGAAGAAGT TTCCCACCTG GTCCTGGCAG GACATGGAGG ATCTTGATGT TGCCCTGGCG
GACTCCGATG TCGTGCTGCT GTCGCTCTAT TACGCGGTGC CGGGGGACAC GTTCTTTACC
TTCGGCGGCA AGGAGTGGGG CGGGGAATAC CTGGTCAAGG TGCCGCCGCG CACGCTGAAG
AAGTTCATCA AGTCCGACCA GGCGTTGTGG TTTGCCAAGT CCTTCTATCA CCGGCGCTAC
ACGCTGGAGG AGAGCCTTGA ACTGACGCGC CGGAGCATGG AGCGGGCGAT GAGCCTCGTG
AAGCCGGACG CACAGGTCTT TGTGCTGACG GCGGCGACCA AGACCGGGAT GCAGGCAGAG
CGGACGGGCG AGATGCGCGC GGCCTATAAC GCGATGTGCA AGGCGTTCTG CGCGGGCCAC
GCCCAGGCCC ATCTGGTCGA TCTGGACGAG GTCCTGCTGG AAGAGGATTT CCAGGACAGC
GACCACTACA CGCGCGCGGG CTATTTCAAG ATCGCGAAAT GCGTGAACGA CTACATGGCC
GACCAGTCGG GGGCCGCCGC GGATGTCGCG GCGGAGTAA
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| Protein sequence | MSTGFEAITA QVKLVIWDLD ETFWQGTLSE GGITPIPAHA EMIKTLADRG IMSSICSKND
FDTAKAELER LGVWDYIVFP HIDWTPKGQA IKTMLSAMGL RAPNVVFLDD NHMNLEEAAF
FNEGLMCVDA TQPLAGLLDL PQMKGKDDRA HSRLAQYKML ETKQAAQAEG ALDNMAFLRQ
SQIRVEILTD LEPHMDRVLE LINRTNQLNF TKNRVETPEA RAELDALLAT SGVHAGLVRV
TDRYGDYGIV GFFAARVKYS GTTVHHFCFS CRTLNMGVEQ FVWQRIGAPE FDFKGPVASQ
LDAGAEVDWI AEASSSDQVF SEQDDRTLCL VGGCDLLQVS FYCGTNRHEF VNKEDRGYLV
RYDDPGFFLN PRKPLKHDQT LKKFPTWSWQ DMEDLDVALA DSDVVLLSLY YAVPGDTFFT
FGGKEWGGEY LVKVPPRTLK KFIKSDQALW FAKSFYHRRY TLEESLELTR RSMERAMSLV
KPDAQVFVLT AATKTGMQAE RTGEMRAAYN AMCKAFCAGH AQAHLVDLDE VLLEEDFQDS
DHYTRAGYFK IAKCVNDYMA DQSGAAADVA AE
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