Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1858 |
Symbol | secF |
ID | 5712850 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 1936814 |
End bp | 1937776 |
Gene Length | 963 bp |
Protein Length | 320 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641267782 |
Product | preprotein translocase subunit SecF |
Protein accession | YP_001533201 |
Protein GI | 159044407 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0341] Preprotein translocase subunit SecF |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.150957 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.772867 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCCTGA AACTCGTTCC CTCCGAGACC AACTGGGATT TCTTCAAGTA TGTCCGGCTG ACCCTCGGCG CCTCGGCGGT GGCCATGGTC GCGTCTCTGG TGCTGTGGCT GTCGGTCGGG CTCAATTTCG GGATCGACTT CCTCGGCGGG ACCACGATCC GCACCGAGAG CGCGCAGGTC GTCGATGTCG CCGCCTACCG CGCGGCGGTG GAGCCGCTGG GGCTGGGGGA TATCTCGATT ACCGAGGTGT TCGACCCCAC CTTCGGCCCG GAGCGCAATG TCGCCATGCT GCGCATCCAG GCCCAGGAGG GCCAGGAGAG CGTGCCGCCC GAGACCATCC TCGCCATCGA GGAGGCCCTG CGCACCGTCG ACCCCGAGAT GACCTTTCCC AGCGTCGAGA GCGTCGGGCC CAAGGTGTCG GGGGAGCTGA TCCTGACCGC CATGCTCGCG GTCGGCGCCT CGATGGTTGC GATCCTGTTC TATATCTGGC TGCGGTTCGA GTGGCAGTTT TCGATCGGCG CCATCGCCGC GCTGGTCCAT GACGTGGTGC TGACCATCGG GATCTTCTCG CTGCTGCAGA TCCGGTTCGA TCTGGCGACC ATTGCGGCGC TGCTGACGAT CATCGGTTAC TCGATCAACG ACACGGTGGT GATCTTCGAC CGGCTGCGGG AGAACCTCAT CAAGTACAAG AAGAAGCCCT TGCGGGACGT GATGAACCTG TCGGTCAACG AGACCCTGAG CCGGACGGTG ATGACCTCGG GCACCACGCT GCTGGCGCTT CTGGCGCTTC TGGCGCTCGG GGGGGACGTG ATCCGGGGCT TTGTCTTCGC GATCTTCTGG GGGATCATCG TCGGGACCTA TTCCTCGGTC TTCGTGGCCA AGAACATCGT GCTGCTTCTC GGGGTGAACC GCGAGCCGAA GGATCCCGAG AAGGGGAATC AGTTCGCGGG TATCGATGCC TGA
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Protein sequence | MRLKLVPSET NWDFFKYVRL TLGASAVAMV ASLVLWLSVG LNFGIDFLGG TTIRTESAQV VDVAAYRAAV EPLGLGDISI TEVFDPTFGP ERNVAMLRIQ AQEGQESVPP ETILAIEEAL RTVDPEMTFP SVESVGPKVS GELILTAMLA VGASMVAILF YIWLRFEWQF SIGAIAALVH DVVLTIGIFS LLQIRFDLAT IAALLTIIGY SINDTVVIFD RLRENLIKYK KKPLRDVMNL SVNETLSRTV MTSGTTLLAL LALLALGGDV IRGFVFAIFW GIIVGTYSSV FVAKNIVLLL GVNREPKDPE KGNQFAGIDA
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