| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1708 |
|---|
| Symbol | |
|---|
| ID | 5713274 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 1775173 |
|---|
| End bp | 1775952 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641267625 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001533051 |
|---|
| Protein GI | 159044257 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0551] Zn-finger domain associated with topoisomerase type I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.352686 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0530118 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGGCT TTCTTCTGAA ATCCCTCTTC TACGCAGGAA AGTCCGCGAT AGACACACCC
GAGCGGAAAG GCGCGCGCGG CGAACGCAAG GTGGCGGGCG CGCTTGCCCA TGGGCTCGCG
GCATCGGGCT ACAAGACCCT GTCGAATCTG ATTCTGCCCC TGGGCGACGC CACCACCCAG
ATAGACCATG TCGTCCTGTC ACGCTTCGGG ATATTCGTCA TCGAAACCAA GAACATGTCC
GGCTGGATCT TCGGAAGCGC CGAGCAAGCC AGATGGACCC AGGTTCACAA ACGCAGCAGA
CGGAGCTTCC AGAACCCGCT GCGCCAGAAC CATGCCCATG TCCTCGCCGT TCAGGGCGCG
TTGGGCATCT CATCGGACCG CGTGCACAAC CTCGTCGTCT TCACCGGAGA GGCGCAGCCA
AAGACGCCCA TGCCGGACAC GGTCTGCTGG GGGCTGAGGG CGCTCGGCAA ACAGATCCGG
CGCTTCCAGA CCCCGGTCCT GTCCGAAGCC GAAGTCGATC GACACCATGA CACACTCCGG
CGTCTCGACA GGGGGGACGA GGCAAGAGAC GCGCATATCG CCGCGAACAG GGCGCGCCAC
GCAACCCTCA AGACCGGGCC ACGAGGGACC CGGCCCCCCG AGACGGGCGC AGCCGATACA
CCCTGCGCCT GCCCGCGCTG CGGCGCGGAC ATGGTCCAGC GCACCGCGCG CAAAACCGGA
ACCGCCTTCT GGGGGTGCCG GAGCTATCCC AAATGCCGCG GGACGCGCCC GATCCGGTGA
|
|---|
| Protein sequence | MLGFLLKSLF YAGKSAIDTP ERKGARGERK VAGALAHGLA ASGYKTLSNL ILPLGDATTQ
IDHVVLSRFG IFVIETKNMS GWIFGSAEQA RWTQVHKRSR RSFQNPLRQN HAHVLAVQGA
LGISSDRVHN LVVFTGEAQP KTPMPDTVCW GLRALGKQIR RFQTPVLSEA EVDRHHDTLR
RLDRGDEARD AHIAANRARH ATLKTGPRGT RPPETGAADT PCACPRCGAD MVQRTARKTG
TAFWGCRSYP KCRGTRPIR
|
|---|
| |