Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1598 |
Symbol | |
ID | 5712742 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 1663920 |
End bp | 1664726 |
Gene Length | 807 bp |
Protein Length | 268 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 641267513 |
Product | inner membrane ABC-transporter permease protein |
Protein accession | YP_001532941 |
Protein GI | 159044147 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.131611 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.983656 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCGCC GGGTGTTGTG GACCTATGCG GTGGTGTATT TGGTTTTCCT CTACCTGCCG GTGGCCTTGC TGCCGATTTT CGCTTTCAAC GACAGCACAA TCATCGCCTT TCCACTCAGT GGTTTCACTA TAAGCTGGTT CGTGGAACTG ACCCAGATCC CGGCGTTGCA TGACGCGGTG CGCAACTCGC TGATCATCGC GCTGTCGACG GCCGTGTTTT CCACGGCGCT CGGAGTGTTT GCGTCGCGTG CGGCCACGCG GTTCGAGTTT CCGGGCAAGG CGGGGATCAT GGGGTTCATT ATGATCCCGC TGGTGCTGCC CGAGATTATT GTCGCGGTTT CATTGCTGGT GGTGTTGCTG CAAATGGGCC TCAACCTGTC GCTTTGGGCG GTTATCCTCG GGCATACCCT GATCTGCACA CCGTTCTGCA TCGCCATCCT GTCAAGCAGC TTCAGCGGCC TCGACAGGTC GCTCGAAGAA GCCGCCATCG ATTTGGGCGA GACGCGTCTC AGCGCGTTCC GGCTCATCAT TTTGCCGCTG GTGGCCCCCG GCATCGTCGC CTCGCTTCTC ATCTCGTTCA CCATTTCACT GGACGAGTTC ATCATTGCCT TTTTCCTGAC CGGCACCGAC CCGACCTTGC CGGTCTATAT CTGGAGCCAG CTACGCTTCC CGCAGAAGCT GCCTGTGATC ATGGCGCTGG GAACGATCCT CATTCTGCTG TCTCTCGTTC TGATCATCAC CGCCGAAGCC TTCCGCCGAC GCGGCTTGCG CAAGAGCGGC CAGACCGACA CCGGAGGGTT CTTGTGA
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Protein sequence | MSRRVLWTYA VVYLVFLYLP VALLPIFAFN DSTIIAFPLS GFTISWFVEL TQIPALHDAV RNSLIIALST AVFSTALGVF ASRAATRFEF PGKAGIMGFI MIPLVLPEII VAVSLLVVLL QMGLNLSLWA VILGHTLICT PFCIAILSSS FSGLDRSLEE AAIDLGETRL SAFRLIILPL VAPGIVASLL ISFTISLDEF IIAFFLTGTD PTLPVYIWSQ LRFPQKLPVI MALGTILILL SLVLIITAEA FRRRGLRKSG QTDTGGFL
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