| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1222 |
|---|
| Symbol | |
|---|
| ID | 5711780 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1263528 |
|---|
| End bp | 1264271 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641267134 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001532565 |
|---|
| Protein GI | 159043771 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.88009 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.487287 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACCC TGCTCATCAC CGGCGCGAGT GCCGGCATCG GGGCCGCCTG TGCCCGGCTG
GCCGCACGCC CCGGCCTGCA TCTCGCCCTG CACTACAACC GCGACGCCGC CGGGGCGCAG
GCCGTGGCCG AGGCGGCCCG CGCCGAGGGG GCCGGGACCA CCTGCCTGCA GGCGGATCTG
GGCGACCCGG ATCAGATCGA CGCGCTCTTT GCCCGGCTGG ACGCCGACTG CCCGCCCCTG
ACGGGGCTGA TCAACAACGC GGGCATCGTC GATGTCACCG CCCGCGTGGA CGAGATGGAT
GCCGCCCGCC TGAGCCGGAT GTTCCAGGTC AATGTCATCG GTGCGATCCT CGTGGCCGGG
TCGGCGGTGG GGCGCATGTC CACCCGCCAT GGCGGGACCG GCGGCGCGAT CGTGAATGTC
TCGTCCGCCG CCGCCCGCCT TGGGTCCCCG GGCCAATACG TGGATTATGC CGCCTCCAAG
GGCGCGATCG ACACCTTCAC CCGCGGCCTT GCGCTGGAGG TCGCGGGCGA AGGTCTTCGC
GTGAACGCCG TGCGCCCCGG CATCATCGAG ACCGGGATCC ACGCCAGGGG CGGCCTGCCC
GACCGCGCCC GGGATCTCGC GCCCACGGTC CCGCTCGCGC GCCCGGGCAC GCCCGAAGAG
GTCGCCCGCG CGATCCTCCA CCTGCTGTCG GACGAGGCGA GCTACACCAC CGGCGCCATC
CTCGACATCT CCGGCGGTCG GTGA
|
|---|
| Protein sequence | MSTLLITGAS AGIGAACARL AARPGLHLAL HYNRDAAGAQ AVAEAARAEG AGTTCLQADL
GDPDQIDALF ARLDADCPPL TGLINNAGIV DVTARVDEMD AARLSRMFQV NVIGAILVAG
SAVGRMSTRH GGTGGAIVNV SSAAARLGSP GQYVDYAASK GAIDTFTRGL ALEVAGEGLR
VNAVRPGIIE TGIHARGGLP DRARDLAPTV PLARPGTPEE VARAILHLLS DEASYTTGAI
LDISGGR
|
|---|
| |