| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1185 |
|---|
| Symbol | ksgA |
|---|
| ID | 5711953 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1220983 |
|---|
| End bp | 1221825 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641267096 |
|---|
| Product | dimethyladenosine transferase |
|---|
| Protein accession | YP_001532528 |
|---|
| Protein GI | 159043734 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0030] Dimethyladenosine transferase (rRNA methylation) |
|---|
| TIGRFAM ID | [TIGR00755] dimethyladenosine transferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.230549 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.468097 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCAGA TCGACGGGTT GCCGCCCCTG CGCGAGGTGA TCGCGGCCCA TAAGCTGTCG
GCGAAGAAAT CCCTGGGCCA GAACTTCCTG CTGGATCTGA ACCTGACGGC GCGGATCGCC
CGGGTGCCGG GGGATCTGAG CGGCGCGGAT GTGCTGGAGG TCGGGCCGGG GCCCGGCGGG
CTGACACGGG GGCTGTTGGC CGAAGGCGCG CGCAAGGTGC TGGCCATCGA GAAGGACGCG
CGCTGCCTGC CGGCGCTGCA GCAGATCGCG GCGGCCTACC CCGGGCGGCT GGAGGTGATC
GAGGGTGACG CGCTGGAGGT GGATGCCACG GCCTACCTGA GCCCGCCGAT TCATATCGCG
GCGAACCTGC CTTATAACGT GGGCACGGAA TTGCTGGTGC GCTGGTTGAC GCCGCCGGAT
TGGCCACCCT TCTGGCGCAC GCTGACGCTG ATGTTCCAGC GGGAGGTGGC GGAGCGGATC
GTGGCGAAAC CCGGCTCCAA GGCCTACGGG CGGCTGGCGA TCCTGGCGCA GTGGCGGGCC
GAGGCAGAGA TCGCGCTGAC CCTGCCGCCG CAAGCGTTCA TTCCCGCACC GAAAGTGCAT
TCCGCTGTCG TTCATCTGCG CGCACGCACG GAACCGCGCT ATCCCGCCGA TGCGGCGGTG
CTGAGCCGGG TGGTGGCGAC CGCGTTCAAC CAGCGGCGCA AGATGCTGCG CGCAAGCCTC
AAGGGGCTGA CACCGGGGAT CGAGGATCAC CTGGCCGCCG TGGGCATCGA CCCGACGCGG
CGGGCCGAGA CCTTGAGCCT GGAGGAATTC TGCGCCCTGG CAAGGCAGAT TGCGGCGGGC
TGA
|
|---|
| Protein sequence | MAQIDGLPPL REVIAAHKLS AKKSLGQNFL LDLNLTARIA RVPGDLSGAD VLEVGPGPGG
LTRGLLAEGA RKVLAIEKDA RCLPALQQIA AAYPGRLEVI EGDALEVDAT AYLSPPIHIA
ANLPYNVGTE LLVRWLTPPD WPPFWRTLTL MFQREVAERI VAKPGSKAYG RLAILAQWRA
EAEIALTLPP QAFIPAPKVH SAVVHLRART EPRYPADAAV LSRVVATAFN QRRKMLRASL
KGLTPGIEDH LAAVGIDPTR RAETLSLEEF CALARQIAAG
|
|---|
| |