| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1088 |
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| Symbol | |
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| ID | 5711056 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1115143 |
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| End bp | 1116930 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641266999 |
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| Product | TRAP transporter |
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| Protein accession | YP_001532431 |
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| Protein GI | 159043637 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.149938 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.307021 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGAGGCGG TCGAGGACCG GGCGGTCCCG CGCAGGCAGG TGTGGATCGC CCTCGGGGCG
CTGACGGTGG CGTTTCATCT GGGGCTGATC TTCTACGGGC TGGTTCCCAA CCTGGTGGCG
CGGCCCTTGC ACATGGCGCT GATCCTGCCT TGGGTGTTTC TGTTCGCCGC CGCCACCCCG
GTGGCGCGGA TCTCGGGGGC TATTCTCACC GGCCTCGGCA TTGCCGGGTG CCTCTGGATC
GCGCTCAACC ACCAGATGTT GCGCAACCAG TACGGCTTTC TCGAAAGCGG GTTCCAGGTT
GCGCTGGCCA TCACATTGCT TCTGGTCGCC ATGGAGGGCG CGCGTCGGGC CATTGGCTGG
CCCCTGCCGC TGGTGGCGCT TCTGGCGCTG CTCTACGGGC TTTACGGGCA GCACATCCCC
GGCGAGTTCG GCCATGCGGG CACGCCCCTG CGCAGTTTTC TCGGCACGCT TGTGGTGGCC
GAGGGCGGGC TCTGGGGCAG TCTGACGGGG GTGTCCGTGG GCGTGGTGGC GGTGTTCGTG
ATCTTCGGCG CGGTGCTGAA CGCGGGCGAG GCGGGGCAGG GGTTCATGAA CGTGGCCGCG
GCCGCCGCGG GGCGGCTGAA GGGCGGGGCG GCCAAGGTGT CGGTCCTGTC CTCGGCGCTC
TTCGGATCGA TCTCGGGCTC GGCCTCGGCC AATGTCGCCT CCACCGGGGC GATCACCCTG
CCGGCGATGA CCAAGCTCGG CTATCCGCGG CGGCTGGCGG CGGCGACCGA GGCGGTGGCA
TCGTCGGGCG GGCAGATCAT GCCGCCGCTC ATGGGGGCGG GGGCCTTCGT GATGGTGGAG
CTGACCGGCG TCCCCTATTC CGAGATCATG CTGGCGGCCC TGCTGCCCGC GATCCTTTAT
TTCGCGACGG TCTGGCAGGG GCTGAACGCC TTCGCGTCGC GCTATGACCT CAGGCCCATC
CCGGTGGAGG ATCGGCCCGC GCGCAGGCAG GTTCTGATCA CCTCCGGCTT TTTCCTGGTG
CCGTTCTCCA CCCTGCTGAT CGCGATGTTC GCCCTGGGCT ACACGCCGCA ATACGCCGCT
GCGCTGGCGA TCTTCACCGG GCTTGCGCTG CTTTTTGTCG ACATCTCCCT GCGGCCGAAT
CCGGGGCAGG GTTTCGCGCG GCTGGCCGAA GCCTTGCTCA ACGCGGGCAA GCAGGTGTCG
ATGATCGCGG CGATCATCAT CTGCGCCTCG ATCATCATCG GGGTGCTGGG CATCACCGGG
CTGGGGGTGA AGATCACCTC GGTGATCCTG TCGGGGTCGG GCGGTGCGCT CTGGCCTGCG
CTGCTGCTGA CCGCGCTCGC GTGTCTGTTG CTGGGGATGG AGGTGCCGAC GACCGCGGCT
TACGTGATCT GCGTCTCGGT GGCGGGTCCG GCGCTGATCG AGCTGGGGTT GGAGCCGTTG
CAGGCGCATC TCTTCGTGTT CTGGTTCGCA CTGCTGTCGA CCATCACGCC GCCTGTTTGC
GGCGCGGTCT TCATCGCCTC CGGCATGGTG CAGGAGAACT GGCTGCGCGT GGCGCTCACG
GCCATGGCGC TGGGCGTCGG GCTTTATGTG ATCCCGCTGG CGATGATCGC CAATGACGCG
CTGATCCGGC TGTCGGCCGA GCCTGGCGCG GCCCTGCTGG CCCTGCTGGT GGTCGGCGCG
GGGCTGGGCG GGGTGTCGCG CGGGCTGATC GGGCGCGAGC CGTGGCCCTT GCGTGTCGCG
GTCTGCGCAG GCGGGCTTGG CCTGTGCTTT GCCGCGCTCT GGGTTTGA
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| Protein sequence | MEAVEDRAVP RRQVWIALGA LTVAFHLGLI FYGLVPNLVA RPLHMALILP WVFLFAAATP
VARISGAILT GLGIAGCLWI ALNHQMLRNQ YGFLESGFQV ALAITLLLVA MEGARRAIGW
PLPLVALLAL LYGLYGQHIP GEFGHAGTPL RSFLGTLVVA EGGLWGSLTG VSVGVVAVFV
IFGAVLNAGE AGQGFMNVAA AAAGRLKGGA AKVSVLSSAL FGSISGSASA NVASTGAITL
PAMTKLGYPR RLAAATEAVA SSGGQIMPPL MGAGAFVMVE LTGVPYSEIM LAALLPAILY
FATVWQGLNA FASRYDLRPI PVEDRPARRQ VLITSGFFLV PFSTLLIAMF ALGYTPQYAA
ALAIFTGLAL LFVDISLRPN PGQGFARLAE ALLNAGKQVS MIAAIIICAS IIIGVLGITG
LGVKITSVIL SGSGGALWPA LLLTALACLL LGMEVPTTAA YVICVSVAGP ALIELGLEPL
QAHLFVFWFA LLSTITPPVC GAVFIASGMV QENWLRVALT AMALGVGLYV IPLAMIANDA
LIRLSAEPGA ALLALLVVGA GLGGVSRGLI GREPWPLRVA VCAGGLGLCF AALWV
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