| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0856 |
|---|
| Symbol | |
|---|
| ID | 5710546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 868179 |
|---|
| End bp | 870593 |
|---|
| Gene Length | 2415 bp |
|---|
| Protein Length | 804 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641266766 |
|---|
| Product | protein of unknown function DUF404 |
|---|
| Protein accession | YP_001532202 |
|---|
| Protein GI | 159043408 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2308] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.319945 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.446218 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGATC CCCTGACTGC GCCCGCGGGT GATCCCGGCC CCTTCGGGGG CCTCTTGGGC
AGCTATGTCC CGCAACCGGG CGTGGCCGAT GAGCTCTTCG ATGCGACGGG CGCCATCCGC
CCTGTCTGGC GCCCGTTCCT GGAACACCTG GGCCGGATCG ATGCCGAAGG GGTGGCCATG
CGGTTCGACC GGGGCACGCA GTATCTGCGC GATGCCGGGG TCTATTATCG CAAATACGGC
GCGGAGGCTG CGAGCGAGCG CGACTGGCCC CTCAGCCCGA TCCCCGTCCT GCTGTCGCAG
GAGGAATGGA CCGAGATCGC CGCGGGGCTG ATCGCGCGTG CGGACCTGCT GGAACAGGTG
GTCGCCGATC TTTATGGCGA GAACCGGCTG CTGGCCGAGG GACACCTGCC TGCGGAGCTA
ATCGCCCAGA ACCCCGCCTG GCTGCGCCCC ATGGTGGGGG TCAAACCGGC CTCGGGCCAT
TTTTTGAACT TCATCGCCTT CGAGGTCGGG CGCGCGCCCT CGGGCCAGTG GTGGGTGCTG
GGCGACCGGA CGGACGCCCC CTCCGGCGCG GGTTTCGCCC TGGAAAACCG CATCGCGACC
AGCCGGACCT TCCCGAACTT CTATGCCCGC GCCAATGTCC ACAGGCTCGC CGGGTTCTTC
CAGGCGTTCC GCGACACGCT CGTGGGCCAG CGGCAGGACC GCGACGAACC TCTGGCCCTG
CTCACGCCGG GGCAGATGAA CGATGTCTAT TTCGAGCACG CTTACCTTGC GCGCTATCTC
GGGATGCTGC TGGTGGAAGG CGAAGACCTG ACCGTGGACC AGGGGCAGCT GAAGGTGCGC
TCGGTCAACG GGTTGCGCCC GATCTCGGTG CTGTGGCGTC GGCTGGATGC GGAGTTCTGC
GATCCGCTGG AGCTGAACGA GGCCTCGACA CTGGGCACGG CGGGCTTTGT CGACGTGGTG
CGCCGGGGCG GCGTGTCCTG CGTGAACGCG CTTGGGGCCG GGGTGCTGGA AACCCGCGCG
ATGCTGGCCT TTCTGCCGAA GATATCCCGC GCGCTGACCG GGGCACCCCT GGCGCTGCCC
AACATCGCGA CCTGGTGGTG CGGCCAGGCG GCCGAACGCG CCCATGTGCT GGCCCACCGC
GACAAGATGA TGATCAGCTC GGCCTACGCC ACCCGCCTGC CCTATGACGA CCCCGGCGGG
ACCAGCGCGC CGGAGGATTA CAGCGCCGAG GGCAGCGCCC GGGTGGCGAA GCTGCTGGAG
GATCGGGGCG GCGACCTTGT GGGCCAGGAG ATCGTGACGC TCTCCACGAC CCCTGTCTGG
AAGGATGGCA AACTGGCCCC GCGCCCGATG TCCCTGCGCA TCTTCCTCGC GCGCACCGCG
ACGGGTTGGC GGGTGATGCC GGGCGGCTAT GCCCGGGTCG CCTCACGCAA CAACGCATCG
GCCATCGCCA TGCAGGCGGG CGGGTCGGTG TCGGATGTCT GGGTGGTCAG CGACAGTCCG
GTGCCCAGAC CCAGCCTCAT GCCCGCCCCG AGCGGCGATC CGGGGGGGCT GAATTCCGCC
TACAGCCTGC CCAGCCGGGC GGCGGACAAC CTCTTCTGGC TTGGGCGCTA TATCGAGCGA
GCCGAAGGGG CGATGCGGGC CTACCGCGCC TATTACGGAT TGATCAGCGC CGGGGTCGAA
CCCGACGCGG ACCTGCCCGA TTTCATCCTG CGCGCGTTTC TGAACAGCAC GGGCCGCGAC
CCGGTGGCCT TGTCCGAAGG GTTCCAGTCC GCGCTGGAAG CCGCGGTCGA CTGTGCTGCG
CGCATCCGCG ACCAGGTCTC GGTGGACGGG ATGCTGGCAC TGAAGGACCT GCTGAAGGCG
AGCCGGAAGC TGCGCGCAAA CCCCATCGCG GTCGAAGAGG CGGCGGCGGC GGTGGGCATC
CTGCTACGCA AGCTGACCGG GTTTTCCGGG CTGGTGCACG AGAACATGTA CCGCTCGGCG
GGCTGGCGGT TCATGAGTGC TGGCATGTCA GTGGAGCGGG CCAGCACCAT GTGCGCCATC
CTCGCCCGGG TGCTGGACCC CGATGCGCCG GACGGAGCGC TGGATCTTGC GCTGGAGCTG
GGCGACAGCA CCATGGCCCA CCGGGCGCGG TTCCTCAGGT CGGTGAGCCC CGACAGTCTG
CGCCAGATCC TTGCCCTCGA CCCCGACAAT CCCCGCGCGG TCGGCTATCA CCTGGGGCGG
CTCAAGAGCC ATATCGACGC CCTGCCCCAG ACCCGGCGCA GCCCGGGCCT GTCGCCGGTG
GCCCGCGCGG CCTTGCAGGT GCATACGGAC CTCGCCGTGC AGGTGCCCGA CACGCTCACC
CCGGACCGGC TGCGCACCCT GCAGCGGCAG ATCTGGACCC TTTCGGACCT GCTCGCGGCC
ACGTACCTGA CATGA
|
|---|
| Protein sequence | MPDPLTAPAG DPGPFGGLLG SYVPQPGVAD ELFDATGAIR PVWRPFLEHL GRIDAEGVAM
RFDRGTQYLR DAGVYYRKYG AEAASERDWP LSPIPVLLSQ EEWTEIAAGL IARADLLEQV
VADLYGENRL LAEGHLPAEL IAQNPAWLRP MVGVKPASGH FLNFIAFEVG RAPSGQWWVL
GDRTDAPSGA GFALENRIAT SRTFPNFYAR ANVHRLAGFF QAFRDTLVGQ RQDRDEPLAL
LTPGQMNDVY FEHAYLARYL GMLLVEGEDL TVDQGQLKVR SVNGLRPISV LWRRLDAEFC
DPLELNEAST LGTAGFVDVV RRGGVSCVNA LGAGVLETRA MLAFLPKISR ALTGAPLALP
NIATWWCGQA AERAHVLAHR DKMMISSAYA TRLPYDDPGG TSAPEDYSAE GSARVAKLLE
DRGGDLVGQE IVTLSTTPVW KDGKLAPRPM SLRIFLARTA TGWRVMPGGY ARVASRNNAS
AIAMQAGGSV SDVWVVSDSP VPRPSLMPAP SGDPGGLNSA YSLPSRAADN LFWLGRYIER
AEGAMRAYRA YYGLISAGVE PDADLPDFIL RAFLNSTGRD PVALSEGFQS ALEAAVDCAA
RIRDQVSVDG MLALKDLLKA SRKLRANPIA VEEAAAAVGI LLRKLTGFSG LVHENMYRSA
GWRFMSAGMS VERASTMCAI LARVLDPDAP DGALDLALEL GDSTMAHRAR FLRSVSPDSL
RQILALDPDN PRAVGYHLGR LKSHIDALPQ TRRSPGLSPV ARAALQVHTD LAVQVPDTLT
PDRLRTLQRQ IWTLSDLLAA TYLT
|
|---|
| |