| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0645 |
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| Symbol | |
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| ID | 5711480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 644406 |
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| End bp | 645413 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641266553 |
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| Product | TRAP-type uncharacterized transport system |
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| Protein accession | YP_001531992 |
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| Protein GI | 159043198 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACATC TCGTTTGCGC GGCTGCGGCC GCCGCAATCT CTCTGTCCGT GGCAACCGGC
GCGAAGGCCG AGGGCGCGAA CTACATCCTG GCCACGGCCT CCACGGGGGG CACCTACTAT
CCGGTCGGCG TGGCGCTTTC GACCCTGGTG AAGGTCAAGC TGGAGCCGTC CCAGAAGATC
GGCATGTCCG CCATCAGCTC GGCCGGGTCG GGTGAGAACG TGCGCCTGAT CCGCGAGGGC
GAGGCGCAGT TCGGCATCAT GCAGGGCCTC TTCGGCTACT ATGCGGCCAC GGGCACCGGC
CCGCTGGAGG AATCCGGCAA GCAGGAAAAC CTGCGCTCGG TCACCATGCT GTGGCAGAAT
GTGGAGCATT TCGTCGTCGC AGCCGACGCA GCGCCCACTG GCACGATCGA GGATCTCGTC
GCCCTGAAGG GCGAGGCCAT GGCGCTGGGA CGTCAGAACT CCGGCACCAT CGGGTCGAAT
GCGACGATCC TGTCGAGCTT CGGGGTGGAC ATCGAATCCG ACTATGAGCT CGTCTTCGGC
GGCTACGGCC CCTCGGCGGA GGCTTTGCAG AACGGGCAGG TCAAGGGCAT CGGCACCCCC
GCAGGCGTGC CCGTGGGCGC GATCAGCCAG CTGATGGCCG CCGCCGGCGA CAGTGTCACC
CTGCTGAACT TCACGCCGGA GCAAGCCGCC CAGGCCGATG GCGGGCGGGA GCTCTGGACC
CCCTACACCA TCGCGGCGGG TACCTATCCG GGCCAGGCGG AGGACGTGCA GACCATCGCG
CAGCCCAACT TCCTCGCGAC GTCTGCCGAC CTGCCGGATG AGCATGTCTA CCAGATCACC
AAGACGATCT ATGAAAACCT GCCCTTCCTG AACGCGATCC ACCCGGCGAC CAAGGCCATG
GCCATCGAGA GCGCGATCGC GGGTCTGCCG CTGCCGCTGC ATCCGGGCGC GCAGCGCTAT
TACGAGGAGG TCGGGATCGA AATTCCGGAC CGGCTCAAGG CCCAGTAA
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| Protein sequence | MKHLVCAAAA AAISLSVATG AKAEGANYIL ATASTGGTYY PVGVALSTLV KVKLEPSQKI
GMSAISSAGS GENVRLIREG EAQFGIMQGL FGYYAATGTG PLEESGKQEN LRSVTMLWQN
VEHFVVAADA APTGTIEDLV ALKGEAMALG RQNSGTIGSN ATILSSFGVD IESDYELVFG
GYGPSAEALQ NGQVKGIGTP AGVPVGAISQ LMAAAGDSVT LLNFTPEQAA QADGGRELWT
PYTIAAGTYP GQAEDVQTIA QPNFLATSAD LPDEHVYQIT KTIYENLPFL NAIHPATKAM
AIESAIAGLP LPLHPGAQRY YEEVGIEIPD RLKAQ
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