Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0553 |
Symbol | |
ID | 5712006 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 539847 |
End bp | 540614 |
Gene Length | 768 bp |
Protein Length | 255 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641266455 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001531900 |
Protein GI | 159043106 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTTGGC AAGACCGCTT CAGCCTGCAA GACAAGACCG CCCTTGTCAC CGGGGCCTCA TCCGGGATCG GCAGAGCCAT TGCCGAGGTG TTCGCCGATG CCGGCGCTGA TATTGTCGGC CAAGGACGTG ACTTGGACCG CTTGACGGAT CTCGGCGCGC AGATCAAGAC CACGGGGCGC CAGTTCGCGG CGATCACCGG CGATCTGGCC GATCCGGATC AAACGCAGAA CGTCGCGGAC CGAGCCCTTG CCGCTTTTGG CAAGATCGAC ATTCTCGTGA ATTCGGCTGG CATTGCCGTG ACCGGCCCGG TGACAAACTA TGATCTCGAC GACTGGCAAC GCACGCTGGC CGTCAACCTG ACCGCGCCAT TCATTCTATC CAAGGCAGTA ATGCCCGGGA TGATGCAGCG CAAACAGGGC AAGATCATCA ACATATCCTC GCAGACAGGT GTGATCGCCT TGAAAGACCA TGCGGCTTAC GCGACCTCCA AGGGGGGGCT CAATGCCCTG ACCAAATCCC TGATGACCGA GGCGGCCCCG CATAATGTGC AGGTCAACGC CATCTGCCCC ACCGTGGTGC TGACCGAAAT GGGCAAGGAA CTGTGGTCGG CGCCGGAGAG AAAAGACCCT TTCATTGCCC GCACGCCACT CGGGCGATTT GGGGAGCCGA TCGAGATCGC GGATATGGCA TTGTACTTGG CGTCGCCCGC TTCGGACCTG GTCAATGGCG CGGTCATGAT GATCGAAGGT GGGTATTCCA GCATATGA
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Protein sequence | MPWQDRFSLQ DKTALVTGAS SGIGRAIAEV FADAGADIVG QGRDLDRLTD LGAQIKTTGR QFAAITGDLA DPDQTQNVAD RALAAFGKID ILVNSAGIAV TGPVTNYDLD DWQRTLAVNL TAPFILSKAV MPGMMQRKQG KIINISSQTG VIALKDHAAY ATSKGGLNAL TKSLMTEAAP HNVQVNAICP TVVLTEMGKE LWSAPERKDP FIARTPLGRF GEPIEIADMA LYLASPASDL VNGAVMMIEG GYSSI
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