| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0122 |
|---|
| Symbol | |
|---|
| ID | 5711745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 120246 |
|---|
| End bp | 121178 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641266017 |
|---|
| Product | OmpA/MotB domain protein |
|---|
| Protein accession | YP_001531472 |
|---|
| Protein GI | 159042678 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGCTCT GGGCCGGGCT CGCCCTGGCC TGGCTTGCCG GAAGCGCCCA TGCGCTGGAG
CTGGCCTTGC CGGATGGCGC GATGCAGGCC CATGACGCCA GCGTCCCGGC GGCCCGCTAC
GCCTTGCCCA CGGGTCCGGC CAAGGCGGGC ACCGTTCCGT TGCGGCAGGT CGAGGGCACG
CTGCGCCACC GGGTCTGGCA CCTGTCGCCG CCTCAAACGC TCGCTGTTTT GTTGGCGAGC
CTTCGCGCGC AGTTGGAAGA GGCCGGGTAC GAAGTGCTGC TGGATTGTAC GGCGCGTGGC
TGCGGCGGCT ACGATTTCCG CTTCGCGGTG GAGGATGTCG GCCCTCCGCA GATGATGGTC
GATCTCGGGC GCTACGGCTA CCTGAGCGCG CGGAATAGTG GCACCGGCCA TTACGCAGTA
ATCCTGGTCA GCGAAACTCG AAGCCTGGGC TATGTGCAAC TGACCGAGAT CACCCCGGCG
GAGATCGCGC TCGATCTGGA CACGACCCCG GACGCACAAG TCCCGGGGGC CGCCCTGGCC
CGGTCCGGAG ACATCGCGCG CCCGCTGGCC GACCTGCTTC TGTCCCAGGG TCGCGTGGTG
TTGGAGGATC TGCGTTTTGC CACGGGCAAT GCCACGCTGG AAAACGGGCA ATACCCGTCC
CTGACCGCGC TGGCAGGGTT TCTGACCGAA AACCCGGATC TGGTGATCGC CTTGGTCGGC
CATACCGATG CCGAGGGCTC CATTGACGCG AATCTGGCCC TGTCCATGCG GCGGGCCGAG
GCTGTGCGCG ACCGGTTGGT AGCGGACTAC GGCGTCGCGT CGGAGCGATT GCGGGCCGAA
GGGGTCGGAT ACCTCGCCCC GCGCGCCACC AACCGGACCG AGGAAGGTCG GCGCGCCAAC
CGGCGGGTCG AGGCGGTGCT GACCCAACCC TGA
|
|---|
| Protein sequence | MKLWAGLALA WLAGSAHALE LALPDGAMQA HDASVPAARY ALPTGPAKAG TVPLRQVEGT
LRHRVWHLSP PQTLAVLLAS LRAQLEEAGY EVLLDCTARG CGGYDFRFAV EDVGPPQMMV
DLGRYGYLSA RNSGTGHYAV ILVSETRSLG YVQLTEITPA EIALDLDTTP DAQVPGAALA
RSGDIARPLA DLLLSQGRVV LEDLRFATGN ATLENGQYPS LTALAGFLTE NPDLVIALVG
HTDAEGSIDA NLALSMRRAE AVRDRLVADY GVASERLRAE GVGYLAPRAT NRTEEGRRAN
RRVEAVLTQP
|
|---|
| |