Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0042 |
Symbol | |
ID | 5711664 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 43160 |
End bp | 43816 |
Gene Length | 657 bp |
Protein Length | 218 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641265936 |
Product | alanine racemase domain protein |
Protein accession | YP_001531392 |
Protein GI | 159042598 |
COG category | [R] General function prediction only |
COG ID | [COG0325] Predicted enzyme with a TIM-barrel fold |
TIGRFAM ID | [TIGR00044] pyridoxal phosphate enzyme, YggS family |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.00000221923 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGGAGTGT CCGAGATCAC CGCACGGATC GGCGCCGCCG CCCGCAAGGC CGGCCGCGAT CCCGCCGAGA TCACCTTGAT CGCCGTCTCC AAGGTTCAGC CCCTCGACCG CGTCGAGGCC GTGCTGGCCG AGGGCCACCG GGTCTACGGC GAGAACCGCG TGCAGGAGGC GCAGGGCAAA TGGCCCGCCT TCCGGGAGAA ATATTCCGGC ATCGACCTGC ACCTGATCGG CCCGCTGCAA TCCAACAAGA CCCGCCCGGC GGTGGAGCTT TTCGACGCCA TCCACACCGT GGACCGCGCC AAGCTCGCCC GCCGCCTCGC CGACCACGCG CAGGAGCGCG GGCAAAGCCC AGACATCTTC GTGCAGGTCA ATACCGGCGA CGAGACCCAG AAGGCAGGCT GCGCCCTGTC CGAGGTGGAC GCGCTCGTCA CCGAATGCCG CGCCCTGGAC TTGCCCCTGA AGGGCCTGAT GTGCATCCCG CCCATCGACG AAGAACCCAG CCTGCATTTC GCCCTCTTGG CCAAGCTCGC CGCCCGCAAC GGGCTGACGG GGCTGTCCAT GGGCATGAGC GGCGATTTCG AGAGTGCCAT CGCCCAGGGC GCCACCCATA TCCGCGTCGG CTCCGCCATC TTCGGCGACC GGGTGAAACC CGCCTAG
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Protein sequence | MGVSEITARI GAAARKAGRD PAEITLIAVS KVQPLDRVEA VLAEGHRVYG ENRVQEAQGK WPAFREKYSG IDLHLIGPLQ SNKTRPAVEL FDAIHTVDRA KLARRLADHA QERGQSPDIF VQVNTGDETQ KAGCALSEVD ALVTECRALD LPLKGLMCIP PIDEEPSLHF ALLAKLAARN GLTGLSMGMS GDFESAIAQG ATHIRVGSAI FGDRVKPA
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