| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1780 |
|---|
| Symbol | |
|---|
| ID | 8419621 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 2051462 |
|---|
| End bp | 2051926 |
|---|
| Gene Length | 465 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 645038364 |
|---|
| Product | protein tyrosine phosphatase |
|---|
| Protein accession | YP_003198642 |
|---|
| Protein GI | 258405900 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0394] Protein-tyrosine-phosphatase |
|---|
| TIGRFAM ID | [TIGR02691] arsenate reductase (thioredoxin) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0180876 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAC AGCTCCGGCT GCTGTTTTTG TGTACCGGAA ATGCCTGTCG CAGTCAGATG
GCGGAAGGAT GGGCCAACCA TTTCTTCCCG GATACGCTTG CTGCAACCTC GGCCGGGGTG
GTCAAGACGG TTGTCGACCC CAAGGCTCGA GAGGTCATGG CGGAAGCCGG TGTGGATATA
AGCGGTCAGT TTTCCAAACA CCTCAGTGAA CTTGAATCGC TTGATTTTGA TTATGTGATT
ACGTTATGCG ACCATGCGGC CCAGCACTGC CCTGTTTTTC CCGGCCAGGC CGTGGTGCTC
CACCACCCGT TTCCCGACCC GCCCCAACTC GCCCGGTCGC TTTCAACCCA AAAAGCGATT
TTGGACGTTT ACCGCGAGGT CCGAGACGCC ATTCGGGAAT ATATTCGGAA TGTACAGGAT
GAATTACCGG AAAAGCAGCC GATCGAACCT CCGCGGCTGA GATGA
|
|---|
| Protein sequence | MSEQLRLLFL CTGNACRSQM AEGWANHFFP DTLAATSAGV VKTVVDPKAR EVMAEAGVDI
SGQFSKHLSE LESLDFDYVI TLCDHAAQHC PVFPGQAVVL HHPFPDPPQL ARSLSTQKAI
LDVYREVRDA IREYIRNVQD ELPEKQPIEP PRLR
|
|---|
| |