Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_1387 |
Symbol | rnc |
ID | 8419216 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 1620984 |
End bp | 1621697 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 645037962 |
Product | ribonuclease III |
Protein accession | YP_003198252 |
Protein GI | 258405510 |
COG category | [K] Transcription |
COG ID | [COG0571] dsRNA-specific ribonuclease |
TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.023535 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.598576 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGATT CGGTATTGCG CTTGGTACAA CAACGTCTGC AGTATACATT CCGCGACCAG CAACTCTTGC TTCTCGCCTT GACCCACAGT TCGTACGCCA ATGAACACCC GCATATTCAG GAACACAATG AGCGATTGGA ATTTCTAGGT GACGCGGTAC TGGAACTCGC CATTTCGGAA GAGTTGTATC TACGATATCC CGAGGCCCCT GAGGGGTCGC TGACCAGTTT GCGGTCCAAG CTGGTCAGTG AACCTGCATT GGCGGCCTTG GGGCGGCAAT TGGAGATCGC CCCGGCTCTG TTTTTGGGCA GGGGGGAGGA ATCACAGGGC GGCCGGGAGC GGGACGCTAT TTTGTGTGAT GTGATGGAAT CCATTTTTGG AGCCATTTTT CTGGACTCGG ATTATGACCG GGCCAAGACC TGCATTCTCG AGCTCTACGT TGATAAATGG CCTTCAGCCC CGAGTCTCGG GCATGAACGG CTTCGTGATT TCAAGAGCCG GTTGCAAGAA TGCACCCAAC AATTGTTCAA GGACCGTCCG GTCTACCATC TGGTGGACAG TACCGGTCCG GAACACGCCA AGGTCTACCA TGTCCGTGTC GATCTGCCCA ATGGCAGTCA GGCGAGTGCG GCGGACAGCA GCGTCAAAAA AGCCGAACAG CAGGCGGCGC GCAAAGCCCT GGAAAGTCTC CAGGCGCTCG AGGCCAGGAA GTGA
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Protein sequence | MDDSVLRLVQ QRLQYTFRDQ QLLLLALTHS SYANEHPHIQ EHNERLEFLG DAVLELAISE ELYLRYPEAP EGSLTSLRSK LVSEPALAAL GRQLEIAPAL FLGRGEESQG GRERDAILCD VMESIFGAIF LDSDYDRAKT CILELYVDKW PSAPSLGHER LRDFKSRLQE CTQQLFKDRP VYHLVDSTGP EHAKVYHVRV DLPNGSQASA ADSSVKKAEQ QAARKALESL QALEARK
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