| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1375 |
|---|
| Symbol | |
|---|
| ID | 8419204 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 1604695 |
|---|
| End bp | 1605825 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 645037951 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003198241 |
|---|
| Protein GI | 258405499 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0067] Glutamate synthase domain 1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.157806 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.645032 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGCCGAT TATTTTCTCT GACCAGCCAA GAGCCGATCT CCCCTATGCG GGCTATCGAG
GCCCTAGACG TCATGCGAGA GGGGCACGAC GGTTCCGGTG TTGGTCTGTA TTTAAATGGC
CTCAACGGCC CCTTGGGCGA ATACGCCGGG TGCCCTATCC TTTCCGGGAT TTTCACTGCC
GAGGGGATTA CGCGCATGGA CACTCTTATG CGCTCGCGCG GCTATACCCC CGGATTTCGT
CTGCCGGTCG CTCCCAAAGG CAAAGCCCCT CTTGGAACGC CATCCCGGCA TACCTATCTC
ATCCAGACCT TTCATCCCCC TGAGGGCTGG GAGGAATGGG AGTCTTTGGA CCAGGAACTC
CACATGCTGC AGACCCGCTT GGAACTGCGC CGTATGGGCC TGGAAAAAGA AGATATCACC
GTCTTTAGCT TCTGGCCCGA TACGGTGGTC ATGAAGGAGA TTGGGGACCC GATGCATGTT
GGGCGCTACC TGCAACTCGA CAGCGAGGAA CTCAAGGCCC AGGTCGTGCT CGCCCAGGGC
CGGCAAAACA CCAACTACGC CATCAACCTC TACGCCTGCC ACCCGTTTTT CATCCAGGGC
CTGTGCACGA TGACAAATGG GGAAAACACC GCCTTTATTC CCATTCGCGA ATATCTCGCC
TCGCAGGGCA TCCTTGGCTA CGAGGGATAC CAATCGGATT CAGAGGTTTT CGCCCATATC
CTGCACTACA CAACAAAACA ATTGGGACTG GGGCTTGAGG CCTACAAACA TATCATCACC
CCCCTCAAAG ACCAGGACCT GGAAGAACAT CCGGACGCCC CGTTTTTGCG CCGTTTAAAA
CAGGCATGCC GCCGCCTGAT CATCGACGGC CCAAACTGTG TTATCGGTTG TCTGCCGGAC
CAGACCATGT TCATGACCCA GGATTCAAAA AAACTGCGCC CTGGAGTGGT CGGGGGGCGT
CCCGGTTTGT ACGCCTTTTC TTCGGAACTT TGTGGCCTGG ACGCGGCCAT CCCGGACAGA
GACAAGTCCA AAGATTTTCA GCCCATGCAT CTCGACACCG CTTATGTCGG TCCTGAGCGC
AAGGAGGTTA CCATATGCCG GCAAACACAG CCATTACCCC ATCAACACTA A
|
|---|
| Protein sequence | MCRLFSLTSQ EPISPMRAIE ALDVMREGHD GSGVGLYLNG LNGPLGEYAG CPILSGIFTA
EGITRMDTLM RSRGYTPGFR LPVAPKGKAP LGTPSRHTYL IQTFHPPEGW EEWESLDQEL
HMLQTRLELR RMGLEKEDIT VFSFWPDTVV MKEIGDPMHV GRYLQLDSEE LKAQVVLAQG
RQNTNYAINL YACHPFFIQG LCTMTNGENT AFIPIREYLA SQGILGYEGY QSDSEVFAHI
LHYTTKQLGL GLEAYKHIIT PLKDQDLEEH PDAPFLRRLK QACRRLIIDG PNCVIGCLPD
QTMFMTQDSK KLRPGVVGGR PGLYAFSSEL CGLDAAIPDR DKSKDFQPMH LDTAYVGPER
KEVTICRQTQ PLPHQH
|
|---|
| |