Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_1343 |
Symbol | |
ID | 8419172 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 1569748 |
End bp | 1570488 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 645037919 |
Product | ABC transporter related |
Protein accession | YP_003198209 |
Protein GI | 258405467 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1126] ABC-type polar amino acid transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.995415 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.559394 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAAATA ACGAACCCAT CATCCACATC GATCACGTCA CCAAGTACTT CGGGCAGTTC GCTGCATTGA AGGATATCTG CCTGGACATC GGCCGTCAGG AACGGGTGGT CATTATCGGC CCCAGCGGTT CCGGCAAGAG CACGCTGCTG CGAACTATCA ACCGCTTGGA GCATATCAAT GCCGGTCGCC TCCTGGTCGA TGGCGTTGAT GTCTCCGCCG CTGATGTGAA CATCAACAAG GTGCGTATGG AATTGGGGAT GGTTTTCCAG AATTTCAACC TCTTTCCGCA CAAGAGCGTT CTGGGCAATC TGACCATGGG CCCCATCAAA CTGAAGAATA TCCCGCGGGA AGAGGCCGAG GCTACGGCCA TGCGCTTGCT GGACAAGGTA GGGATCGGGG ACAAGGCCCA TGTCTATCCC CGCCAACTTT CCGGGGGACA GCAACAGCGG GTGGCCATCG CCCGGGCCCT GGCCATGAAT CCTAAAATCA TGCTCTTTGA TGAACCGACT TCAGCCCTGG ATCCGGAAAT GATCGGGGAA GTGCTTGATG TCATGGTTGC CCTGGCCAAG GAAGGCATGA CAATGGTCGT TGTCAGTCAT GAAATGGGTT TTGCCCGTGA AGTGGCCGAT CGTGTGGTGT TCATGGATGA CGGCGAGATC CTCGAAGTCG GACCGCCGGA GCATTTTTTC CAGAATCCCG AACACCCTCG CACGAAACAG TTTTTGAGTC AGATCCTGTA A
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Protein sequence | MTNNEPIIHI DHVTKYFGQF AALKDICLDI GRQERVVIIG PSGSGKSTLL RTINRLEHIN AGRLLVDGVD VSAADVNINK VRMELGMVFQ NFNLFPHKSV LGNLTMGPIK LKNIPREEAE ATAMRLLDKV GIGDKAHVYP RQLSGGQQQR VAIARALAMN PKIMLFDEPT SALDPEMIGE VLDVMVALAK EGMTMVVVSH EMGFAREVAD RVVFMDDGEI LEVGPPEHFF QNPEHPRTKQ FLSQIL
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