| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1032 |
|---|
| Symbol | |
|---|
| ID | 8418855 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 1215268 |
|---|
| End bp | 1215912 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 645037602 |
|---|
| Product | protein of unknown function DUF162 |
|---|
| Protein accession | YP_003197898 |
|---|
| Protein GI | 258405156 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1556] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00153846 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAAA AGGAAAAGAT GGTACAAACC TTCCGCGAAA AAGCGGAGGC GGTTTCGGCG
GTGGTCTCTG ATGTGACCAC CATGAACGAG GCCTACGAGT ACGCCGCCAA TCTCTGTGCC
CAAAAAGAGG CCTGCCAACT GCTTATCTCT GGGTGCGAAG CCCCGCTTTC TCCTGATGCG
GAAGACCTTT GCCAGCTCAA AGAGATGCAG AAGATCATGG CCGCGCCGGG GATGAAGAAA
AAGGACATCA ACGCCCTGAG CAAGGTCTGC AAAGAATACG AGGTTTCTCT GATCGACAAG
GGATTGCGCC ACCACCTCGC CGGCATCGAT ATCGGGTTCA CGGTCTGTGA TTACGGTATC
GCTGATACCG GGACGCTGGT GCTCAATTCC AGCAATGAGG AACTGCGGTT GGCCACCATG
ATCAGTGAGA TCCATGTGGC CGTGTTGCCG TTGTCCAAGC TCCAGGCCAC CTCCTACGAT
CTGGAGAAAG AGATGGGCAA ATGGATGAAC AAACCGCCCA ACTATACGGC CTTTATCACC
GGAGCGAGCC GGACGGCTGA TATCGAACGC GTCCTGGCGC TCGGCGTGCA CGGGCCTCTT
GAACTGCATA TTCTTCTGCT GGAGGACAGC AATGCAAGAA GCTAA
|
|---|
| Protein sequence | MTKKEKMVQT FREKAEAVSA VVSDVTTMNE AYEYAANLCA QKEACQLLIS GCEAPLSPDA
EDLCQLKEMQ KIMAAPGMKK KDINALSKVC KEYEVSLIDK GLRHHLAGID IGFTVCDYGI
ADTGTLVLNS SNEELRLATM ISEIHVAVLP LSKLQATSYD LEKEMGKWMN KPPNYTAFIT
GASRTADIER VLALGVHGPL ELHILLLEDS NARS
|
|---|
| |