Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_0987 |
Symbol | |
ID | 8418809 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | + |
Start bp | 1161432 |
End bp | 1161995 |
Gene Length | 564 bp |
Protein Length | 187 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 645037556 |
Product | Tetratricopeptide TPR_2 repeat protein |
Protein accession | YP_003197853 |
Protein GI | 258405111 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.00201205 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.000380468 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACAGCTA ACCTCCCGGC GTTGAATAAA TGTGTTCTGG CTGCGTTGGG CGCCGGGCTG GTGATCCTTT TCGCGGGTTC TGTCGTTTAT CGGACCATGC ATCCCAGCCT GGTGGTGCAA ACCAACCAAC CGCAATCGGG CGGCGGTTCC ATGGAGCAGA TTTCTGCCCT GATGGGGCAG TTGCAGGAGA ACCCTGGCGA CGTGAACGCC TTGTCGCGTC TGGCTATCGC GTTTTCCCGA ATGGAAGCCT GGGATCGTGC GGCTACCTTC TGGCAGCGGG TCCTGGATCA GGAACCCGCG AACATGCGCG CTCTTCAGGG GATGGCCATG GCTTCATTTC GAATGCAGCA ATTCGAGACA GCCGTGACCT ACCTGCGCAA GGCGCTGGAA GAGGACCCGC AGTCCTACCG CACGCATTAC AATTTGGCCA TCGTGTATAA ACATTTTCTG CAACAACCGG ACAAGGCCCG TTCCCATTTT CAAACCGTTG CGAACGCCTC CGAGGCGCCG GCGGAATTGC GAGAGCAGGC TAAGGCTGAA TTGGCGCAGG AAAGAGAGCA ATAA
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Protein sequence | MTANLPALNK CVLAALGAGL VILFAGSVVY RTMHPSLVVQ TNQPQSGGGS MEQISALMGQ LQENPGDVNA LSRLAIAFSR MEAWDRAATF WQRVLDQEPA NMRALQGMAM ASFRMQQFET AVTYLRKALE EDPQSYRTHY NLAIVYKHFL QQPDKARSHF QTVANASEAP AELREQAKAE LAQEREQ
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