| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0844 |
|---|
| Symbol | |
|---|
| ID | 8418663 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 1001183 |
|---|
| End bp | 1002595 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645037413 |
|---|
| Product | peptidase M48 Ste24p |
|---|
| Protein accession | YP_003197713 |
|---|
| Protein GI | 258404971 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000000290245 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0785618 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATGTGC TGCGTTGGGC ACTGATCGCT GTCGCCCTGA CAGGCCTGCT GTTTTCCGGC
CCTGTTCAAG GGGCTCTTCT CGGGGACTTC ACTATTCAAG ACGAAGTTGA ATTGGGTCGT
GAAGTCAACC AATTCGTTCG TTCGCACTTT GATCTCCTCA ACGATCCGGT TGTTGCCGAG
TATGTCCGCT CGGTCACTGA GCGTATCGAG AGCCATCTTC CTCCCCAGCC TTTTCCCATC
AGCGTCACTG TTGTCAACGA TGAGAGCCTG AACGCCTTTG CCGCTCCAGC CGGGTACATG
TTTGTTCACA CCGGGTTGCT TTTGCATCTG GAATCCGAGG CCCAATTGGC CGGGGTTATC
GCCCACGAAT TGGCCCACGT GACCCAGCGC CATATCGCCC GAAACATTGA GCGGAGCCAG
TTGATCAATC TGGGGACTCT GGCCGGTATG CTGGCCGGCG TCTTTCTCGG AGGCGGCGGA
GAGGGGAGTG AAGCCCTGGC CATGGGCTCC CTTGCCGGGG GACAGGCCGC AGCGCTGAAA
TATTCGCGCG AGGACGAGCG TGAGGCCGAT CAGATAGGGG TCCACTATCT GCAAAACGCG
GGCTACCCTG TCCAGGGCAT GGTCGAGGCC TTTGAAGTCA TTCGCAAACG GAAATGGTTC
TCAGGCCATT CTTTGCCGAC CTACCTGAGC ACGCACCCCG GAGTGGGAGA ACGGATTGCC
GCCTTACAGG GCCGTGTTGA GGGAGAATCT TCTGGATCAT CGTCGTTGCA AAGCGGCACG
TCCCGTTTTG AGCGCATTCA AATGTTGGTC CGGGCCAGAT ACACCGACCC CAGCAGTGCC
CTTGTTGCTT TCAACGACAC CCAATCGGAA CAAGACACGT GTATGCTGGC CCTGGGCCGG
GCCATCGCCC TGGAACGCTT GCAACGGGTG GAGGAGGCCG GTCAGGCGTA TGAGCGAGCC
CTGGATTGTG CGCCGGACGA TCCTTTAGTC CAGCGGGAAG CCGGTCACTT TATGTATCTC
CAGGGCAAAC TGGACCGAGC CCGACGTTTG CTCAAGGCCG CATTGGACCA GCGCCACACC
GATACCCGGG CGATGTTCTG GTATGCCCAG ACATTGGCCC AGGCCGGAGA TCCAGAGCAC
AGTATCCGGA TTGGAGAAGA GGTCGTGCGT CGTGAGCCGC GTAATGCGCG GGCCCATGCT
TTTCTCGGCC GTCTTCAGGG GCAACGGGGG AAGCTGTTTG AAGCCCATCT CCATTTGGCC
TACGCGGCGC TCTATGGACA CGGCGCCTCG CAACTCCCGT TTCATATTCA GAAAACCAAA
GAGATGGCCC ATTCCGAAAA ACAGCGGCAG CGCCTCTCTT CCCTGCAGGA GGCTGTGGCG
GAGTCCAAGA AGTTGGAAAA GCTCACGCCT TGA
|
|---|
| Protein sequence | MHVLRWALIA VALTGLLFSG PVQGALLGDF TIQDEVELGR EVNQFVRSHF DLLNDPVVAE
YVRSVTERIE SHLPPQPFPI SVTVVNDESL NAFAAPAGYM FVHTGLLLHL ESEAQLAGVI
AHELAHVTQR HIARNIERSQ LINLGTLAGM LAGVFLGGGG EGSEALAMGS LAGGQAAALK
YSREDEREAD QIGVHYLQNA GYPVQGMVEA FEVIRKRKWF SGHSLPTYLS THPGVGERIA
ALQGRVEGES SGSSSLQSGT SRFERIQMLV RARYTDPSSA LVAFNDTQSE QDTCMLALGR
AIALERLQRV EEAGQAYERA LDCAPDDPLV QREAGHFMYL QGKLDRARRL LKAALDQRHT
DTRAMFWYAQ TLAQAGDPEH SIRIGEEVVR REPRNARAHA FLGRLQGQRG KLFEAHLHLA
YAALYGHGAS QLPFHIQKTK EMAHSEKQRQ RLSSLQEAVA ESKKLEKLTP
|
|---|
| |