Gene Dret_0618 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_0618 
Symbol 
ID8418430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp741786 
End bp743003 
Gene Length1218 bp 
Protein Length405 aa 
Translation table11 
GC content34% 
IMG OID645037186 
Producthypothetical protein 
Protein accessionYP_003197493 
Protein GI258404751 
COG category[S] Function unknown 
COG ID[COG2327] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.511941 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0191891 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCTATA ATATTTTATT ATATGGTGGA TATACTCTTT GGAGTGCTGG CGATGATGCA 
CCAATGCACT TTCTCACCAC ACAGCTTAAA AATAAAACTG ACAAGGATAT TAAATTTACT
GTATTTTGCC GACATCCTAA TACAGAATTT GATACATATT ATAATGTAAA AACAAAACAA
AACTTTGAAT ACAAAACAAA AGAGTTGTCG TCTGGAAGAT GGATGAGGGG GTTGAATTCT
TCTGATAATA GGAAAGATTT GCTTGATATA GCTACAGAAA TCTCAGCATC GGACTTAATC
ATCCTTGGTG CTGGTAATTT TATAACTGAA GTCTCATTGG ATGTATTAAG AGGGCATTTT
GCACAGTTTG TAGTACTGAC TTTAATTGCA GATATGTGCC ATACACCTTG TATGCTTTTT
GGATTAAGTG CGAATAAACT GAAAAATCCC TGGACAGCCA AGGCGGCCGG ATGGATGCTT
CATCGAGCAT CATGCGTAAC ATTTCGTGAA AAAAATGCAG TTGAAAATTT AATAAGTAGC
GATGTTTCTC TTCCTCAATA CGAATTACTG CCTGATGCTG CCCTTGGCTC TCCTGTTGCA
AATATCAATC GAAGTAAAGA AATACTTCGC AATGAACATA TTGACTTATC AAACAAAAAG
GTCTTAGCCA TATCAATTAG AGATTTATCC TGGATGAATG CGGATGAGAA ATATCAAAAA
AATCTCAAGA ATACTATAGA TAAATGGCTT TATAGCGATA ACCAAAATGT TATTCTATTT
ATTCCACAAT GTACCTATGA TGTTGAAAAT AGCTTAACAG ATGATAGATA TGTTGCTCAT
AAATTGTCAA AACAAGTCAA CTTTCCGGAT AGATGTTTTC ATATTAAAAA CAAATATCAA
GCACCAGACA TTGAATGTCT ATACCGTGAA GCTGATATAA CACTAGCAAC AAGACTTCAC
GGTTCAGTAT TTTCAGCTAA AATGGGGACA CCAGTTATAG GTCTTTGCTA TGAAGATAAA
GTGAAAGGAT TTTTTAGACA ACTAAATTGT CCTGAATTAG CTTTAAAATG GGATGAAGAA
TCAGAAATAA TATTTAATAA GATTATGGGA GTATTGCAAA ACAAACAGCA CATAGTCAGT
AAAATCAACG ACAATGTTTC GATTCTTCAA AAAAAATTAG GCCGGTATGT TGAACTTGCA
TATAATCTTT TAACATAA
 
Protein sequence
MSYNILLYGG YTLWSAGDDA PMHFLTTQLK NKTDKDIKFT VFCRHPNTEF DTYYNVKTKQ 
NFEYKTKELS SGRWMRGLNS SDNRKDLLDI ATEISASDLI ILGAGNFITE VSLDVLRGHF
AQFVVLTLIA DMCHTPCMLF GLSANKLKNP WTAKAAGWML HRASCVTFRE KNAVENLISS
DVSLPQYELL PDAALGSPVA NINRSKEILR NEHIDLSNKK VLAISIRDLS WMNADEKYQK
NLKNTIDKWL YSDNQNVILF IPQCTYDVEN SLTDDRYVAH KLSKQVNFPD RCFHIKNKYQ
APDIECLYRE ADITLATRLH GSVFSAKMGT PVIGLCYEDK VKGFFRQLNC PELALKWDEE
SEIIFNKIMG VLQNKQHIVS KINDNVSILQ KKLGRYVELA YNLLT