Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_0038 |
Symbol | |
ID | 8417840 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | + |
Start bp | 47020 |
End bp | 49443 |
Gene Length | 2424 bp |
Protein Length | 807 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 645036601 |
Product | glycoside hydrolase family 57 |
Protein accession | YP_003196918 |
Protein GI | 258404176 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1449] Alpha-amylase/alpha-mannosidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGGTT CGATTTGCAT ACATGGCCAT TTTTATCAGC CGCCGCGGGA AAATCCGTGG CTGGAAGAAG TCGAATTGCA GGAATCGGCG CATCCGTATC ATGACTGGAA CGACCGGGTC ACCGACGAAT GTTACGCCCC CAACACCGCA GCCCGGATCC TGGACGGCAA GCGCCGGATC ATCGACCTGG TCAACACCTA CGCCCATATC AGTTTCAACT TCGGAGCGAC ACTGCTTTCC TGGATGGAGC GCCACCGGCC CGAGGTTTAC GAGGCCATCC TCGAAGCTGA CCGGCAGAGC CTGCAACGGT TTGGAGGCCA CGGTTCCGCC CTGGCCCAGG TTTACAACCA CATGATCATG CCTCTGGCCA ATAAACGGGA CAAGGCGACC CAAGTCTATT GGGGGTTGCG GGATTTTGAG CGCCGTTTTG ACCGCACACC AGAGGGCATG TGGCTGCCGG AGACCGCCGC AGATACAGAT TCTTTGGATG TTCTGGCGGA GATGGGCATT CAGTTCACCA TCCTGGCTCC TTCGCAGGCC AAGAAGGTTC GGTTGTTGGA CGAGACGTCC TGGGAGGACG TCGACGGCGG CCGTGTGGAC CCCAAGTTCC CGTATCGATG CCATTTGCCT TCCGGGCGCT CCATCGTCGT TTTTTTCTAT GACGGGCCGA TCTCCCAGGA TGTGGCCTTC GGCGGTCTGC TCCACAATGG CGAGGAGTTT GCTCACCGGC TCCTGGGAGC TTTCGATCCC AAGGAAGAAA ACGGCCAGCT GGTGCATATC GCCACTGACG GCGAGACCTA CGGCCACCAC CACCGTCTGG GGGATATGGC CCTGGCCTAT TGTCTGCACT ACATCCGGGA GTACACCGAT ACCGAGGTCA CGATTTACGG GGCCCATTTG GCCCAGCACC CTCCGCAGCG CGAGGCAATG ATCAAGGAGC AGAGTTCCTG GAGCTGCGTC CACGGTGTGG AACGGTGGCG GGGGAATTGC GGCTGCCACA GCGGTCTTAA CCCCGGGTGG CAGCAAAAAT GGCGTAAACC CTTGCGCCAA GGCCTGGACT GGGTCCGGGA CAGCGTCGCT CCTGTGTACG CCGCAGAGGC CTCCCGGATT TTTCTTGATC CCTGGCAGGC CAGAGACGCG TATATCGAGC GGCTTTTCGA CAAGGACTGG GACGCCACGG CTGTGTTTCT TGAAGAGCAG GCCGGGCGGA TTCTGACCCA GCAGGAACGG GTCCAGGCCT TGAAATTGCT GGAAATGCAG CGCTACGCCA TGCTCATGTA TGCGAGCTGC GGTTGGTTTT TCGATGAGAT TTCAGGCATC GAGACGACCC AGATTTTGAT GTACGCCGAC CGTGTGCTCC AATTGGCTGA GGAGACCGCG GGGCTGGATC TTGAGAACGG ATTCCTGGAA TATCTCGAGC AGGCCCCCTC CAACGTGCTC GCCTACGGTC ACGGCGCGGA GGTCTTCCGT CGCCTGGTCG CTCCAGCCAA GCTCGATTTG CTCCGCGTTG GGGCCCATTA CGCCATTTCG TCCCTGTTCG AGTCTGATCT CGAGCAGATT CGCATTTATT GCTATTCCGT GCAGTGCGAA GATTTCCAGC GGCAGGAGGC CGGGGCTCTC AAGCTCGGCA CGGGCCGGGC ACGTATTGTG GCCGAGATCA CCGGGGAAAG CGCGTCTTTC GGGTTCGCCG CCCTGCACCT AGGGGACCAC AATGTCATCG CCGGGATTCG GCAGGCCCGT GAGAGCGGTG ACTTCGAAGC CATGCGCAAG GATCTGGGCG CCGCATTCAG TCGCAGTGAT GTCCCGGAAT TGGTGCGGAG CATGGATGCC CATTTTGAGG ACCGCTATAC CTTGTGGCAC CTGTTCAAGG ATCCGCAGCA AAAGGTCCTG GATGAGATCA TGCGAGCCAC CCTGGACGAG GTCGGGGTCA ATTTGCGGCA GATTGTGGAC GCCAATTACA CCTTGATCAA TTTCTTGCGC GATATGCCCC GACCGTTGCC CAAACCCCTT GCCGTATCCG CGGAATATGT TCTCAATGAG GATCTGCGGT GGATCCTGGA GCAGGATCTG CCCGATCTGG AGCGGTTCGA GGAACTGGTA CAGCAAATGC AACGCTGGGA GATCCCTTTG GCCAGACAGG ATTTGCGCTA TCGGGCAAGC TGGCGGATCG GGGCCCTTTT CGAGCGTTTG CGCGAAAAGC CGCAGGACAC CGTTTTACTG ACCGATATTG AACGGTTGAT CCGTCTGTTG CGCGAACTCG GCCTTCAGGT CGATCTGTGG AAAGCGCAGA ATGTCTATTT CTCTTTGACC CAGGATTGGC TGGAGGCCAT GCGCCAGCGG GTTCAGGATG GTGAACCGGA GGCGAAGTCC TGGGTCGCGG TGGTCGAGCG GCTGGGCGGA TTGCTGGAGG TGTGCGCCGC ATGA
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Protein sequence | MSGSICIHGH FYQPPRENPW LEEVELQESA HPYHDWNDRV TDECYAPNTA ARILDGKRRI IDLVNTYAHI SFNFGATLLS WMERHRPEVY EAILEADRQS LQRFGGHGSA LAQVYNHMIM PLANKRDKAT QVYWGLRDFE RRFDRTPEGM WLPETAADTD SLDVLAEMGI QFTILAPSQA KKVRLLDETS WEDVDGGRVD PKFPYRCHLP SGRSIVVFFY DGPISQDVAF GGLLHNGEEF AHRLLGAFDP KEENGQLVHI ATDGETYGHH HRLGDMALAY CLHYIREYTD TEVTIYGAHL AQHPPQREAM IKEQSSWSCV HGVERWRGNC GCHSGLNPGW QQKWRKPLRQ GLDWVRDSVA PVYAAEASRI FLDPWQARDA YIERLFDKDW DATAVFLEEQ AGRILTQQER VQALKLLEMQ RYAMLMYASC GWFFDEISGI ETTQILMYAD RVLQLAEETA GLDLENGFLE YLEQAPSNVL AYGHGAEVFR RLVAPAKLDL LRVGAHYAIS SLFESDLEQI RIYCYSVQCE DFQRQEAGAL KLGTGRARIV AEITGESASF GFAALHLGDH NVIAGIRQAR ESGDFEAMRK DLGAAFSRSD VPELVRSMDA HFEDRYTLWH LFKDPQQKVL DEIMRATLDE VGVNLRQIVD ANYTLINFLR DMPRPLPKPL AVSAEYVLNE DLRWILEQDL PDLERFEELV QQMQRWEIPL ARQDLRYRAS WRIGALFERL REKPQDTVLL TDIERLIRLL RELGLQVDLW KAQNVYFSLT QDWLEAMRQR VQDGEPEAKS WVAVVERLGG LLEVCAA
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