| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1148 |
|---|
| Symbol | |
|---|
| ID | 4955625 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | - |
|---|
| Start bp | 1218445 |
|---|
| End bp | 1219632 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640180317 |
|---|
| Product | aspartate aminotransferase |
|---|
| Protein accession | YP_001112507 |
|---|
| Protein GI | 134299011 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000148908 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTACTGT CTGATAAAGT AGCCTCTTCT TTAGGCAAAG CTTCCTGGAT ACGTAAAATG
TTTGAAGAAG GTGACCGCCT AAGAAAAATT TACGGTCCTG AAAAGGTATT TGATTTCACC
CTTGGTAATC CCTCCGTAGA ACCCCCGGAA AAATTTAACG AACAATTAAA AACATTAGCC
CTTAACCCTG AACCAGGCAT GCATCGTTAT ATGAGCAATG CAGGTTATCC CGAAACCCGC
TCCGCCGTGG CTGAGGTCAT AGCGGAACAA TCAGACTTGC CCTTTACGGC TCAGCACATC
GTCATGACCG TAGGGGCCGG GGGCGGCCTC AATGTGGTTC TCAAAGCGAT CTTAAACCCC
GGGGATGAGG TTATTGCACT GTCTCCTTAT TTTGTGGAAT ATGGATTCTA TGTTGATAAT
CATGGGGGAG TCTTAAAGGT TGTTCCTAAC GATGAAAAGT TCCTGCCTGA TTTAGACGCC
ATCGCCTCTG CTATCAATGA AAAGACCAGA GCCATCATCA TTAACTCTCC CAATAACCCT
ACTGGTGTTG TTTACCCAGC TGAAACACTG GCATCCTTAG GCAAGTTAGT GACAGAAAAA
TCTCAACAAT GGGGGAGGCC AATCTTTGTC CTTTCGGATG AACCCTATGC CAAGATTGTT
TATGACGGTG TAAAAGTCCC CTCTGTTTTC CCGTATATAA CCAATGCAAT CATGGTTACC
TCCCACAGTA AAGACCTTGC ATTGCCGGGC GAACGTATTG GTTATATTGC AGTTAACCCT
AGAATTAACG GAGTTAACCA ATTGGTAGAA GGTCTAATAT TCTGCAACCG TACTTTGGGC
TTTGTAAATG CTCCTGCTTT AATGCAACGC CTGGTGAAAG GATTGCAACG GGAATCCGTC
AACATAGAGG AATACCAGGA AAAGCGCGAT GTTCTATACA ATCATCTTAC CTCACTGGGC
TTTGAAATAC AGAAGCCCCA AGGAGCCTTT TATCTATTTC CTAAATCACC CCTTGCTGAT
GACCTTGAAT TTACCAGAGT AGCCCTAAAT CACAATATTT TGGTAGTTCC AGGTGGTGGT
TTTGGTACAC CAGGCTATTT CCGCCTGTCT TACTGCATTG AAATGGATAC CATAAAAAGA
TCTCTACCGG CCTGGACTAG TCTGGCCCAA GAACTAGGTC TGAAATAA
|
|---|
| Protein sequence | MVLSDKVASS LGKASWIRKM FEEGDRLRKI YGPEKVFDFT LGNPSVEPPE KFNEQLKTLA
LNPEPGMHRY MSNAGYPETR SAVAEVIAEQ SDLPFTAQHI VMTVGAGGGL NVVLKAILNP
GDEVIALSPY FVEYGFYVDN HGGVLKVVPN DEKFLPDLDA IASAINEKTR AIIINSPNNP
TGVVYPAETL ASLGKLVTEK SQQWGRPIFV LSDEPYAKIV YDGVKVPSVF PYITNAIMVT
SHSKDLALPG ERIGYIAVNP RINGVNQLVE GLIFCNRTLG FVNAPALMQR LVKGLQRESV
NIEEYQEKRD VLYNHLTSLG FEIQKPQGAF YLFPKSPLAD DLEFTRVALN HNILVVPGGG
FGTPGYFRLS YCIEMDTIKR SLPAWTSLAQ ELGLK
|
|---|
| |