| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2122 |
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| Symbol | rpsA |
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| ID | 5694965 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 2576789 |
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| End bp | 2578267 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641264723 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_001530003 |
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| Protein GI | 158522133 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000709036 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACACC ATGACCATGA CGATGAATCG TCAAAGACCG ACAAGGGCGA AGAGACCGAA
GATTTTGCAG CTTTGCTGGA ATCCTACATG ACCGACATGA AACCGGAAGT CCGGGTGGGA
GACAAAATCA CCGGTGAAAT CATCGCCATC GGCAAGGACG CCGTCTTTTT CAACACCGGC
ACCAAGTCAG ACGGAGTGGT GGAAAAAGCC GAGCTGCTGG ATGAAAACGG GGAACTTCCC
CACAAGGTGG GGGACCGGCT GGACCTCTAC GTGGTGGACA CCCGGGACGG CGAAATCCGC
CTGTCCAAAG CCATGGGCGC GGGCTCAGGC GTTGACATGC TTTACGAGGC CCATCAAAAC
CGGATTCCGG TGGAGGGTAA GGTCATTGAA ACCTGCAAAG GCGGGTTCCG GATCCAGGTC
ATGGGCCAGA CCGCCTTCTG TCCGGTGAGC CAGATGGATG TTCACTACGT TGAAAAGCCC
GAAGAGTTCG TGGGCGCCGT CTTTCCCTTT CTCATCGAGC GCATTGAGGC AAGAGGCAAA
AACCTGGTGG TCAACCGCCG CCGCCTGCTG GAGCAGGAGC AGGCCGAACA GCGGGAGAAA
TTCCTGGCAC AGGCCCGGCC CGGCGATATT GTCGACGGCA GGGTGGTCCG CATCATGCCC
TATGGCGCTT TTATGGAGCT TCAGCCCGGC GTGGAAGGCA TGGTCCACAT CTCCGAACTG
AGCTGGTCCC GGGTGGGTGA TCCTTCCGAA GTGACCGCCG TGGGCGAGGT GCTGCCGGTC
CGCATTCTTG CCATCGACAG GACGGGCAGC AAGACCGGGG GGCTGAAGAT ATCCCTGTCG
GCCAAACAGG CCGCTGTTGA TCCCTGGAAA ACCGTTGGGG AAAAATATAA AGAGGGCGAC
AAGATAGAGG GCAAGGTCAC CCGGTGCGCC GATTTCGGTG CCTTTGTGGA GGTGGAGCCC
GGCATCGAAG GGCTGGTGCA TATCAGTGAG ATGAGCCATA CCCGACGGGT GGTCAAGGCC
GAAGATGTGG CCCGGCCCGG GGACCGGGTG GCGGTGATGG TCACATCGGT GGACCCGGTC
AACCGGCGAC TGTCTCTAAG TATCAAGGCG GCCGAGGGCG ACCCCTGGCT CACCGTTGCC
AACCGGATGG CTGTGGGCCA GACCGTTTCC GGCACCGTGG AACGGGTCCT GGACTTCGGC
TGTTTTATAT CCCTGGCGCC GGGCGTCACC GGGCTGATGC CCCGGTCCAG CATGGAACGG
GCCGCCGATC CAAAGGCCAT GGAAAAGCTG AAAGCCGATG ACCCGGTGAC GGTAAAAATC
GAGACCATCA ACCTTGCCGA CAAGAAAATC TCGCTGGCCC CGGCGGATGC CGAGGGGGCC
TCGGACTGGA AGCAGTACAC CGGTAACGAA CCCAGGCAGG CCGGTGGCCT TGGAGACCTG
GGGCAGAAAC TCCAGGCGGC CATGAAGACA AAAAAATAG
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| Protein sequence | MTHHDHDDES SKTDKGEETE DFAALLESYM TDMKPEVRVG DKITGEIIAI GKDAVFFNTG
TKSDGVVEKA ELLDENGELP HKVGDRLDLY VVDTRDGEIR LSKAMGAGSG VDMLYEAHQN
RIPVEGKVIE TCKGGFRIQV MGQTAFCPVS QMDVHYVEKP EEFVGAVFPF LIERIEARGK
NLVVNRRRLL EQEQAEQREK FLAQARPGDI VDGRVVRIMP YGAFMELQPG VEGMVHISEL
SWSRVGDPSE VTAVGEVLPV RILAIDRTGS KTGGLKISLS AKQAAVDPWK TVGEKYKEGD
KIEGKVTRCA DFGAFVEVEP GIEGLVHISE MSHTRRVVKA EDVARPGDRV AVMVTSVDPV
NRRLSLSIKA AEGDPWLTVA NRMAVGQTVS GTVERVLDFG CFISLAPGVT GLMPRSSMER
AADPKAMEKL KADDPVTVKI ETINLADKKI SLAPADAEGA SDWKQYTGNE PRQAGGLGDL
GQKLQAAMKT KK
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