Gene Dole_2012 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_2012 
Symbol 
ID5694852 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand- 
Start bp2437967 
End bp2438572 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content59% 
IMG OID641264610 
Productpeptidoglycan-binding LysM 
Protein accessionYP_001529893 
Protein GI158522023 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1388] FOG: LysM repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.340695 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGGCA CTCTCAACAA CAACGGCAGG ACCATTCTTT TTGTGACCGC GGCATGCGCG 
GTTTTTATTA TTGTCGTCCT CGTTATCCTG TCGGTGGCCG GGCGTTCGTC CGTGTCTACC 
CAGGAATTTG CCGCGATGCA GCAGCGCGTC CAGGCCCTGG AAGCGGAAAC CAACCGCCTG 
GCCATTGCCC TGGAGACAAT GGATGCGCTT GCCCGGCAGG TCGATGCGTT TGATCAGATT 
ATCAAGGAAT CGGCAAAGCG GGAAACCGAT CTGCTGTTCA GAGTCAGCGA CCTTGAGGCA 
AAGGCGGGCA TTTCAAGAGC ACCGGCAACC GAGACCCCGG AGGAGGCTCC CGTTCCTCAA 
GCCGCTCCTC AGGCCGATCC TGAGACCGCC CCCCCGGCCA CCGTATCCGA CATGCCGGCC 
AAACCCGAAT CACCTGCCGT CCAGCCGGCT TCAGCAACCC CCGATGGATA TTACACAGTG 
GTCAAGGGCG ATACCACCTA CAGCATCAGC CGTAAGTTTG GTCTCACCGT GGACCAGCTC 
CTGGAGATGA ACAACCTGAA ATCCACAGAC ATCTTTCCGG GCCAGACGCT TAAAGTGAAG 
CCGTAG
 
Protein sequence
MTGTLNNNGR TILFVTAACA VFIIVVLVIL SVAGRSSVST QEFAAMQQRV QALEAETNRL 
AIALETMDAL ARQVDAFDQI IKESAKRETD LLFRVSDLEA KAGISRAPAT ETPEEAPVPQ 
AAPQADPETA PPATVSDMPA KPESPAVQPA SATPDGYYTV VKGDTTYSIS RKFGLTVDQL 
LEMNNLKSTD IFPGQTLKVK P