| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1703 |
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| Symbol | |
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| ID | 5694540 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 2033679 |
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| End bp | 2039963 |
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| Gene Length | 6285 bp |
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| Protein Length | 2094 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641264298 |
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| Product | YD repeat-/RHS repeat-containing protein |
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| Protein accession | YP_001529584 |
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| Protein GI | 158521714 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACATCG AAACCTCAGT CAAATGGTTA CTGGTCGGAC TTTTTTTCTT TGCATTGTGC
CTGGTATCCG GCACGGCAAC AGCCGATGTC TCAGACACCA CCCAGGAGAT GACCTACCTG
TACACCGGCG CCAAGGCCAT GCCCCAGACC ATGGCATCCA CCGGCGCGGC ATCCACCAGT
ATTCCGATTG CGGTCCCGCC GGGCCGGGCC GGGCTTGCCC CTCAACTGTC CATCAACTAT
AACAGCTATG CAAAAGACGG GGTCGCCGGC CTTGGCTGGT CACTGGCCGT CCCCTTTATC
CAGCGCTCCA CGAAAGACGG GCTGGACTGT TCGGCAGATG ATTTCATGGT CAACGGCTCC
GACGAACTGG TCCCTCGTCC GGGCACCAAC ACGTTTGGCG CAAAAATCGA AGGCGGTTTT
TCAAAGTACC GGCTCTGGGC CGTCAACGAT TACTGGGAGG TCACGGCCAC CAACGGCACC
CGGTATTTCT ACGGCTACCG GGACGCCTCC GAGTCCGCAA ACTCCCGGCT GTCATCCGCC
TATTGCAACA AAACCGTTGT CTGGTACCTC GATTACGTGA TCGACACCAA CGGCAACTAC
ATGACCTTTG ACTACATCAT TGATGAGAAC ACGGTCTACA TTTATCAGAT CAAGTATACC
GGCAACGCCA ATACCTTTGA CGCCCCCAAA AACTCCGTGA TCTTTGGTTA CGAAATCCGG
CCGGATAAAC CGCATGTTTA TCCATTCAAT GATGATGCCC GAATGCAAAA ACGGATGACC
GCCATCAAAG TGAAGGGTAA TAACAGAGCC GTAAGAAAGT ATGTGCTGGG TTACGACAAT
CCGGAAACCG GCATGTACAC CGGCCGGTCC CTGCTTACGT CGGTCACCCA GTATGGATAT
GATAACGACG GCATTGAACA TGCCCTTCCG GCCCAGACCT TTGAATATTA CGAAGAGCAG
GCCGACTACA GGGCGGCGAA TGAATGGGTG TCCGGCGGAC CATGGGCACA GGTGCCATAC
AGCCAGCCAT ACGGTTTTGC CGACTTTAAC GGAGATAACA GAGCCGACTT CTGGTATGTT
CCTATTAGTG GCCCGTTAGA AATCTGGGTA AGGCTTGCCA ATGCGGCAGG CGACGGTTTT
AAAACCGCCT CCAAATGGGC CACCATGGAC AATATCATCG GGGGGGGGGA TTCCTTCTGG
TCACCGACAT TTCTCATGGC ACTGGAATGC AAGGGATTTG CCGACCTGGA CCGGGACGGT
AAACTGGACC TCTGGTACCT GAGATACGCA ACCGACCAGG AATTCCAATG CACGGATGGT
TTTTGTTTGC CTGTGTATCC TCTTAACGTG GAACTGGTGG TCTGCCTCTC CACCGGCAGT
GATTTTGGCG CCCCTCAGCA GTGGGCCTCT TTTACCCCCA TGCCGACTCC GTTGACTGGT
TCTTTCGGCT TCGACCCGGA ATCCGGCCGT CGTTTTTCCA ACTGCCGGGG CATGGATGAT
ATCAACGGTG ACGGCATGCA GGACTTCTGG TTTGTGACCA ATGAGCGTAA GGTGCTTGTG
GGCTTTTCAG ACGGTTCCAG TTTTGGTTCT GTCACCCAGC GTACCACGCT TCCGGCCGGT
TCGCAGAACA ACTATACCGG GGGATATTTA CATGGCTTTG CCGACCTGAA CGGCGACGGT
AAAGCAGACC TGTGGGACAT CTATGTGTCG CCTGATACCA ACGCCTACGG ATTGTATGCC
AGGCTCTCCC AGGGCGAGAC CTTTGGCCCG CGAAAACGCT GGCACGATCT GGGATACGTG
ACGTGGGCCT GGACTTCCCT CCTGCAATGG TGGCGGGGGT TTGCCGATTT TAACGGGGAC
GGTAAGCAGG ACTTCTGGTA TTTCCCTTCA AATGATGGCC AGCCCGTTCC CTATGGCTCC
ATCCGCATTG CCCTGTCTTC CGGTGACCCG GACGTCGGGT TTGTTCAGGA AAGCACATGG
GCATCCTATA CACCGACAGC AAACAACCGT GCCGGTTTCG GGTTTGCCGA TATCGACGGC
GACGGCAAGG CCGATTTTTT CCGGTCGGAT AATGCTGAAA ACATTATCAA GGTAAGGCAG
TCCACCGGCT ATGACTTCAA ACCGCTTGCC GCATGGGCGA CCCTTCCCAC CTATATTCCG
GACTGTAACC GCCATTTTGC TGATTTTAAC GGCGACGGCA AGCTGGACTA CTGGTATCTG
TATGCCGGTG TGCATGTGGG GCTTTCCCGC ACCAACCCGG TGGGCCTGCT CAAAGAGATC
GACAACGGCA TGGGCGGCAC CTTTACCCTG GACTATACCC CCTCTTCCGC CTATGACAAC
CTGTGTCTGC CCATGGTTCT TCAGACCGTG TCCTCTATCA CCGCGGACGA CGGCCGTGGC
AACACCTACA CCACTTCCTA TGATTATGAA GACGGCTATT ATGACTATCC GGACAAGGAG
TTCCGGGGGT TTCGATACTC CATGCAGACC GGGCCGGACG GCACCTTTCA GAAAACAAAA
TTCATCATTG ACGACACATG GTTGAAAAAC CGGATCAACT GGGCAAAAAC ATGGTCTCCC
CTGGCAAACC CGGATGTTAA CGACCCGATC AGTGACGTGG ACTACTCATG GGAAAAAACG
TTTCTTAACA CCGAAGAGAC CTGCGCGTTT GTCTACCTGT GGAAAACCCG GGTAGACACC
ACTGTGGGCG GGGTCAGCTC CTTTACCCGG GACCTGACAA CCTATCAGGA CACCCTGTCA
AGCGGGTTTT TCGATCTTTC CACCACGGTT TCCACCTGCG GGTCGGACGG CGTGAACTTT
GAAACCATCA CCACGACAAA AACACTGGAA AACCAGGGTG GCTGGACATG GCGCGTGGCA
GAAGAGACCC TCTCCGGCAA TCAAAGCGGT TTAAAACGCC AGACCACATA CACCTACGAC
AGCAACGGCA ACCTTGAAAC CAAAACCCTG TATAATGACA CGGGCACAAG CCCGATGTTT
TCGTATACCT ACGACGCCTA TGGCAATCTT GAAACCGAAA CCGACGCGGA AAACAACCCC
CCAACCGTGT TTGAATACGA TGCCACCACC CACACCTTTC CCACCCGGAT CATTGCGCCG
TCCACCAACG GCGTGTCTCA TGTTATTGAA AAGACCTATG ACCTGCGCCG GGGCAAGGTA
AAAACAGAAA CCGATGAAAA CGGCCACACC ACCACCTACC ATTACGACCC CTTTGGCAGA
ACAGAACGCA TTGACGCGCC GCCCAACACC GCCGGCCAGT TCGGCCAGAT CGCCTATATT
TACGATGACG ATGCCGCCAC CCGCAAGGTG ATCTCCCTGG TCAAGGAAGA CGCCAATGAT
GTGTGGGTAA AAGACGGCAA CGGCGGGGTC GGGTACGAAG GCTATATCAG CGACAGCATC
TATGCTTATG CGTGGATGGA CGGACTTGGC AGAAGAATAA AGACCAAGAC CAAGGGCATC
AAGCTGGTGG AGGGCCAGCC CACGGCAACA GCCGTGCTTA CGGACTTCTA TTACGACGCC
TATGGCCGTC AGAACCTTGT AAAAGGCCCC TATTTTAACG GCGACGAGCC CTATCCCCAG
GTGCAGACCT ACTATGACCC GGACATGCCG CAAAAGCCGG TCAAAATAGA GACCTGGGAC
AGCGCCCTGG GCGCCATTGC CACAAACTTC TCATACAGCG GTCTTGCCAC CACCATCACC
GACCCGGACG GCGGCAAAAA AACAGATATC AAGGACTGCC GGGGCAACCT GATCGGTGTT
GTCGAATACA ACGACAGCGG CGCCCAGTAT TACACCACCT ATGAATACAA CGCCGTGGGC
GAACTGACCC GGGTGGAAGA CCACCTGGGC AATGTCACCT CAATCGAATA CAACACCCTG
GGTCAGAAAA CCTCGATGAA TGACCCGGAC ATGGGAGAGT GGTTCTACAC CTACACCCCC
AACGGCAGCC TGGACACCCA GACCGACCCC ATGGGCCAGG CGGTGAGCTT TGAATATGAC
GAACTGGGCC GGGTGACGGA CAAGATATAT TCAGCCAACG GCAACAACGT GACCTATGCG
TACGACACCG GCACCAACGG CATCGGCCGG CTCTACCAGG TCTCCAACTT TGTCTCCACC
CTGGCGCCCT ATGTAATCAC CACGTACGAC GCTTACGACC AGATGGGCAA CCCGGTCCAG
GTGACCCAGG AGATGGCCAA GGCCGGCAGT ACGCCCCGCA CCTACACCTC GGGCGCGTCT
TACGACATCA CGGGCCGTCC ACAGGAGGTC TACTATCCGG ACGGCTTCTG GGTGGGCTAC
GACTATTACG CAAACACAGG CCTGTTAAAA GAGGTCAAAG GCGCCTACGA CCTTAATCCT
CACACCTATG CCGCCTATGC CGATTATGAC CCCTCCGGCC GCATCAAGCA GATGGGTTTT
GGCAACGAGG TCTATCACAC CTACACCTAC GACCAATCCT CCAGGCGGCT GGTGGGGTTT
GTCACGGAAG ACAAAAACGA CCCGCAGCAG CCCATTATTC TTCAGCACCG CACCTATACC
TACTCAAAGG CCGGGGACGT GACATCCATT GCCGACGGCC TGCTGGGCAT GACATACCAC
TACACCTACG ACAAGCTGCA CCGGCTCACA TCAGAAACCG TTACCGGCAA TGTGCCGTCC
ATCATCACGC AAGCCTCTGT GATGAACTTT GACGACTATG CCTCCGGCCC GGCAGCCCAC
GGGGTGGACA CCCTCACCCT GGACAGCATG ACCCAGACCG GCCAGGAATA CGGCTATAAT
TACGACGCCA CCGGCAACAT GATATCGGCC CCGGACTTTA CAGACCCGAA CCAGCCCGCC
ACCCGGTCCA TTGAATACAA TGCCGACGGC ATGCCGGTTT ACGTGGGCCA CTCCGCCCAC
GGCGCCACGG AAATCGCCTA TGACGGCGAC GGGGCACGGG CCATCAAGGC TTCAGGCATT
CACGATATCT ACTATGTCAC CGGCTCCTTT CAGGTGGAGG AATCGAGCGG CGCAGCGGTG
CGGACCACCA AGTACATCTT TGCGGGCAAC GCCCGCATTG CCATGATCGC CACTGTGGGG
GCCGCGGACA CCACGCGCTA TTTTCATACC GATCACCTGG GCAGCACCAC CGTGCTGACC
GACGAAACCG GCCAGGTCGC CTATGGTTTT GGCTACCTTC CCTATGGCCT GGACAGAGAG
CCCGGCACAA ACGACCCGAC CCCCTATAAA TTCACCGGCC AGGAACAGGA TTCTGAAACC
GGGCTTTACA ACTACAACGC AAGGCTCTAT GATCCGGCCA TTGGTCTGTT TACGCGGGCG
GATACCATTG TCCCCAATTT TGCCGATCCA CAGACCCTGA ACCGGTACAC CTACTGCCGG
AACAACCCGC TGGTGTATGT GGATCCCAGT GGGCATGTTT TTGGAATTGA TGATGCAATT
ATTATCGCTG CTGTAGTAAA AGGAGCGGCT TATGGAGCGG CCATCAACGC GACAGTAGCA
GCGGCCACTG GAGGAGATAT AGGCCAGGCC GCACTAACCG GTGCGATACA AGGTGCGATT
TTTGGTGGAA TACATTGTAT ACCGGGAATG GGTGAAGGGG TTAATGCCTT CTCTGCCGCC
AAACAGGCAA CTGTTCATTT TATGGGTGGC ATGGTAGGCG GTGGAATCAG TGCTGCCGTA
ACCGGCGGTG ATGTGGGCCA GGGAGCAGTC ATCGGCGGGC TGTCCGCCGG TGTCGGTAAA
TTCGCCGGCA TGAAATACCT TGACGGGGAA AACTGGGGAG TCCAACTGGG CGGACGGTCC
CTGCTGGGCG GCACGTTTGG CGGTGTTGCC GCTGAAATGA GCGGAGGAGA CTTTGGAGAC
GGGTTTGTTC AAGGCGCAAG AATGGCGGCA ATTGCAATGA TTTGCAATGA TATGAACCAG
ACTATGTTTG ATAGCTTATC CAAATTGTGG TGGAATGATG GTAAGAACAA TAATGACCCA
CGAATGAATC CATATGCGAG AAAAAAGCCA TATGAAGGCA CATATGAAGG CGGAATAGAT
GCCATTGGCG CCATTGGTGA GGCGATCAAG CCTGATATGG AAGGAATGGC GGCTCGAATA
CAGTGGCAGT TAAAAGTTTC AGGTTTAGAA GAAGCGATCA ATGCTGGCCC TTTGCATCCG
CTTCATTGGG AACAGACTGC GCTTTGGGGA TTTTCGGGTA TATGGCTTAG GCAAGATTAC
TATTTAAATG AGCCATGGGG GCATACCGTT TCAGGGTCGC ACTAA
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| Protein sequence | MHIETSVKWL LVGLFFFALC LVSGTATADV SDTTQEMTYL YTGAKAMPQT MASTGAASTS
IPIAVPPGRA GLAPQLSINY NSYAKDGVAG LGWSLAVPFI QRSTKDGLDC SADDFMVNGS
DELVPRPGTN TFGAKIEGGF SKYRLWAVND YWEVTATNGT RYFYGYRDAS ESANSRLSSA
YCNKTVVWYL DYVIDTNGNY MTFDYIIDEN TVYIYQIKYT GNANTFDAPK NSVIFGYEIR
PDKPHVYPFN DDARMQKRMT AIKVKGNNRA VRKYVLGYDN PETGMYTGRS LLTSVTQYGY
DNDGIEHALP AQTFEYYEEQ ADYRAANEWV SGGPWAQVPY SQPYGFADFN GDNRADFWYV
PISGPLEIWV RLANAAGDGF KTASKWATMD NIIGGGDSFW SPTFLMALEC KGFADLDRDG
KLDLWYLRYA TDQEFQCTDG FCLPVYPLNV ELVVCLSTGS DFGAPQQWAS FTPMPTPLTG
SFGFDPESGR RFSNCRGMDD INGDGMQDFW FVTNERKVLV GFSDGSSFGS VTQRTTLPAG
SQNNYTGGYL HGFADLNGDG KADLWDIYVS PDTNAYGLYA RLSQGETFGP RKRWHDLGYV
TWAWTSLLQW WRGFADFNGD GKQDFWYFPS NDGQPVPYGS IRIALSSGDP DVGFVQESTW
ASYTPTANNR AGFGFADIDG DGKADFFRSD NAENIIKVRQ STGYDFKPLA AWATLPTYIP
DCNRHFADFN GDGKLDYWYL YAGVHVGLSR TNPVGLLKEI DNGMGGTFTL DYTPSSAYDN
LCLPMVLQTV SSITADDGRG NTYTTSYDYE DGYYDYPDKE FRGFRYSMQT GPDGTFQKTK
FIIDDTWLKN RINWAKTWSP LANPDVNDPI SDVDYSWEKT FLNTEETCAF VYLWKTRVDT
TVGGVSSFTR DLTTYQDTLS SGFFDLSTTV STCGSDGVNF ETITTTKTLE NQGGWTWRVA
EETLSGNQSG LKRQTTYTYD SNGNLETKTL YNDTGTSPMF SYTYDAYGNL ETETDAENNP
PTVFEYDATT HTFPTRIIAP STNGVSHVIE KTYDLRRGKV KTETDENGHT TTYHYDPFGR
TERIDAPPNT AGQFGQIAYI YDDDAATRKV ISLVKEDAND VWVKDGNGGV GYEGYISDSI
YAYAWMDGLG RRIKTKTKGI KLVEGQPTAT AVLTDFYYDA YGRQNLVKGP YFNGDEPYPQ
VQTYYDPDMP QKPVKIETWD SALGAIATNF SYSGLATTIT DPDGGKKTDI KDCRGNLIGV
VEYNDSGAQY YTTYEYNAVG ELTRVEDHLG NVTSIEYNTL GQKTSMNDPD MGEWFYTYTP
NGSLDTQTDP MGQAVSFEYD ELGRVTDKIY SANGNNVTYA YDTGTNGIGR LYQVSNFVST
LAPYVITTYD AYDQMGNPVQ VTQEMAKAGS TPRTYTSGAS YDITGRPQEV YYPDGFWVGY
DYYANTGLLK EVKGAYDLNP HTYAAYADYD PSGRIKQMGF GNEVYHTYTY DQSSRRLVGF
VTEDKNDPQQ PIILQHRTYT YSKAGDVTSI ADGLLGMTYH YTYDKLHRLT SETVTGNVPS
IITQASVMNF DDYASGPAAH GVDTLTLDSM TQTGQEYGYN YDATGNMISA PDFTDPNQPA
TRSIEYNADG MPVYVGHSAH GATEIAYDGD GARAIKASGI HDIYYVTGSF QVEESSGAAV
RTTKYIFAGN ARIAMIATVG AADTTRYFHT DHLGSTTVLT DETGQVAYGF GYLPYGLDRE
PGTNDPTPYK FTGQEQDSET GLYNYNARLY DPAIGLFTRA DTIVPNFADP QTLNRYTYCR
NNPLVYVDPS GHVFGIDDAI IIAAVVKGAA YGAAINATVA AATGGDIGQA ALTGAIQGAI
FGGIHCIPGM GEGVNAFSAA KQATVHFMGG MVGGGISAAV TGGDVGQGAV IGGLSAGVGK
FAGMKYLDGE NWGVQLGGRS LLGGTFGGVA AEMSGGDFGD GFVQGARMAA IAMICNDMNQ
TMFDSLSKLW WNDGKNNNDP RMNPYARKKP YEGTYEGGID AIGAIGEAIK PDMEGMAARI
QWQLKVSGLE EAINAGPLHP LHWEQTALWG FSGIWLRQDY YLNEPWGHTV SGSH
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