| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1406 |
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| Symbol | |
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| ID | 5694241 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 1671263 |
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| End bp | 1672879 |
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| Gene Length | 1617 bp |
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| Protein Length | 538 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641263999 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001529287 |
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| Protein GI | 158521417 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.7882 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCCGGC GTGTCCTGTG GATTTGCCTG GTGGCTCTGT GTGTGTCGTG GGGATGCGCA
AAAGACCGGT CGGCGGTGCA GCAGCAGGAC TTCCTGGAAA AATGGCAGGC CCGGGCCGAG
GCCTCAAAGG GGTATTCGCC GGGTCCGTCG CCGGACATGG AAAGCCTGGC TGTGGTGGAA
GCCGCTGAAG AAAAAGGCAA TGCCATCGAG ACCATTGACG TCAAGCCCGG TTACAAGCTG
GGCGCGGAAG ACGGCAACGC CCTGATCGGC CTCGAGGAGC TGCCCGACAC GCCGGTGACC
ATTCACATGA CAGACACCGA TATCGCCGTT ATCCTTCGGG CGCTGACCAA GGCCGCCGGC
AAAAACATCA TCATCGGCGC CGGTGTGAGC GGCCGGGCCA ACATCAATGC CGAGGGCGTG
CCGTGGAAGG AAGCCTTTGC CGGCCTGCTG CGGACCCACG GGCTGACCTA CAACCGCATC
GGCGACACCC TGCGCATCAA GACCCTGGCC GATATTCAGC AGGATTTTGC CATTGAAAAC
GCATACCGCA AGCAGCAGGG CGAGCGCAGT GTCACCCAGG TGTTTTTTCT GAAGTATTCT
GAGGCCGCTG ACGTGGCCAA CCTGCTCAAG CCGGTCACGG CCCGGGCGGC ATCGGCGGAA
GGTGTAAAAG AGGCACAGCA GAGCGTTGTG GTGGACAAGC GGAACAACGC GGTGATCGTG
CATACACCCC TGCCCGGTAT CGAACAGTGC GCGGCCCTGA TTCGGCAGAT CGACCGGCCC
ACCCGGCAGG TGCTGATCGA GGCCCATATC GTGGAGACCT CCAAGGATAC GGCCCGTCAG
CTGGGCATCC AGTGGGGCGG CGTGGCCAAG GACAAGCAGC ACAGCTGGTT TACCGGGGCC
ACAGAAGGGC CCGCGGGCCA AACCCTGTTT GACGCCAACG GTGTCCCGGT GGCGGCCAAC
CCCACCGGTA ACTGGGCCGC CAATTTCCCG GCCAGCCTGG GCAACACAGG ACTTTCCCTT
GGTTATATTT ACCAGGACCT GGGCCAGAGC CTGATCGCGG CCCAGCTTAC GGCCCTTGAG
GAGGATGGGA AGCTGAACAT TCTCTCCTCG CCCTCCATCA CTACTTTAGA CAACAGCGCG
GCGGTGATCG AAAGCGGCCG GGATGTCCCC TTCCAGACCG TGGAAGACAA CGAGGTAAAC
ATCGAGTGGA AAAAAGCGGT GTTAAGCCTT GCGGTGACGC CCCACATCAT CGACGCTTCA
ACCCTGCGCG TTAAAATCAA AACCCACAAG GACGAGCTGG ATTGGTCCAA CGCGGTCCTG
ACCGACGGCA ACCCCACCAT TATCACCAAG AACGCGGAAA CCGAGATGAT CCTGTTTGAC
GGCCAGACCA CGGTGATCGG CGGTCTTAAC AAACAGTCGT CGTCCCAGAG CCAGTTCGGG
GTTCCGCTGC TGGGCCGCAT ACCGATCCTG GGTTTTTTCT TCCGGTCCAC GAGCCGGTCC
AATGACATGG AAGAGGTGCT GATTTTTATC ACGCCGCACA TTCTGGAACC CTATACCGCC
GCCACTGGCG CGGGAGCCGA CAAGGAGAAA ACGGTTGCGC CGGGCGGGGA TTCCTGA
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| Protein sequence | MGRRVLWICL VALCVSWGCA KDRSAVQQQD FLEKWQARAE ASKGYSPGPS PDMESLAVVE
AAEEKGNAIE TIDVKPGYKL GAEDGNALIG LEELPDTPVT IHMTDTDIAV ILRALTKAAG
KNIIIGAGVS GRANINAEGV PWKEAFAGLL RTHGLTYNRI GDTLRIKTLA DIQQDFAIEN
AYRKQQGERS VTQVFFLKYS EAADVANLLK PVTARAASAE GVKEAQQSVV VDKRNNAVIV
HTPLPGIEQC AALIRQIDRP TRQVLIEAHI VETSKDTARQ LGIQWGGVAK DKQHSWFTGA
TEGPAGQTLF DANGVPVAAN PTGNWAANFP ASLGNTGLSL GYIYQDLGQS LIAAQLTALE
EDGKLNILSS PSITTLDNSA AVIESGRDVP FQTVEDNEVN IEWKKAVLSL AVTPHIIDAS
TLRVKIKTHK DELDWSNAVL TDGNPTIITK NAETEMILFD GQTTVIGGLN KQSSSQSQFG
VPLLGRIPIL GFFFRSTSRS NDMEEVLIFI TPHILEPYTA ATGAGADKEK TVAPGGDS
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