| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1244 |
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| Symbol | |
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| ID | 5694078 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 1484212 |
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| End bp | 1486530 |
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| Gene Length | 2319 bp |
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| Protein Length | 772 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641263837 |
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| Product | putative phytochrome sensor protein |
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| Protein accession | YP_001529127 |
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| Protein GI | 158521257 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000557718 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGTGA CGCTCTCCAC CGCCCAGACA GGTACAGGAG CCCATAGCTC CTCTTCCGAT
GCCGAATACA GAAGAAAGGT GCAGGAGGTC AACAAGCGCA TCTTTTCCGC CGCCAACCTG
GATGAAATCC TTATCGACAT CAAGGAAGAC ATCATTGACC TTTTTGCCGC CCAGCGCATC
ACCATCTATT ACGTGGACGG CATCAAGCGG GAACTGGTAT CGCGGTACAA GTCCGGCGAG
GAGGTGGAGG AGATCCGGGT GCCCCTGTCT CCGGACAGCA TTGCCGGTTT TGCCGCCTAC
AAGCAGCGAA TGGTCAACAT CAAGGACGTA TATAACCAGC GCGAACTGGT CAAGATCGAC
CCGGCCCTCT CCTTTGACGA AAAATGGGAC CGCCGCAGCG GTTTTACCTC CAAACAGATA
CTGGTGGCCC CTATCCTGTT TAAAAAGATG CTCATCGGTG CCATTCAGCT GGTCAACCGC
AAGGACGGCA AGCCGTTTAC CGAAGAGGAC GAACGGAACC TTACCGAGCT GGCCGAAACC
ATGGGCATCG GCCTGTACAA CCAGAAAAAA ATGGCGGCCG CCAAAAAAGG CCGGCGCAAC
AAGTACGATC ACCTGATGGA AAACCATATC CTTACGCAGA AAGAGCTGAC CCGGGCCGTT
ACCCTGGCCA GGGAAAACAG CCAGACCGTT GAGGAGGTGC TGATCAAGGA GTTCAATGTT
CCCAAGGATG AACTGGGAAC CTCCCTTGCC AAATACTATG ACGCGCCTTA CCGGCCCTAC
GACAAAGGGA CCCCCATTCC CGGTGAACTG CTGGGCGGCC TGAAAGTGCC GTTCATGAAA
AACAACACAT GGGTCCCCCT GTGCACCACG CCTGAAGGCG ACATCCAGAT CGCTATTGAC
AACCCCCACG ATATTCAGCG GGTCAACGAG ATTAAGGCTC TGTTCACGGG CAAGCGTATC
AAGTTCTGCG TCTCCTTCAA GGAAGACATT TACGATTTTA TCGAGCTGTT CACCACCGAC
GAAGTGGAAA CCTCCTCCAT TGACGATATT CTTTCCAAGA TGCAGGAGGA GGAGGAAGAG
ATTGAAGACA CCTCCATGGG GGTCAGTGAA GAGAGCAGCG CCATTGTCCA GCTGGTCAAC
AAGGTCATTA TTGACGCCTA CAACCGGGGG GCCTCGGATA TTCACATCGA ACCCTACCCT
GGAAAGGGCA ACACCGAGGT GAGAATCCGG GTGGACGGCC GGTGCACCCT GTACCAGACC
ATTCCCTACC ACTACAAAAA CGCGGTGGCA TCCCGTATCA AGATCATGTC CGACCTGGAT
ATCGCGGAAA AAAGAAAACC CCAGGACGGC AAGATCAAGT TCAAAAAGTA CGGGGGCCTG
GACATCGAGC TTCGTGTGGC CACCGTCCCC ACCCAGGGCG GGCTGGAAGA TATCGTCATG
CGTATCCTGG CGGCGGGCGA GCCCATTCCG CTGTCCAAGA TGGGCTTTTC AAAACACAAC
TACGACAACT TCATCACCTG CGTTACCCGG CCCTACGGGA TCATCTTTGT CTGCGGCCCC
ACCGGTTCCG GTAAAACCAC CACCCTGCAC TCGGCCCTGA AATATATCAA CAAGGTGGAA
ACAAAAATAT GGACCGCCGA GGATCCCGTT GAAATCACCC AGCGGGGCCT GCGCCAGGTC
CAGGTAAAGC CCAAAATCGG CTTTGACTTT GCCGCGGCCA TGCGGGCCTT TCTCCGTGCC
GACCCGGACG TGATCATGGT CGGTGAAATG CGGGACAAGG AGACCACTCA CATCGGCATT
GAGGCATCCC TCACCGGCCA TCTGGTCTTC TCCACACTGC ATACCAACAG CGCGCCGGAA
AGTATCACCC GTCTGCTGGA CATGGGCATG GACCCCTTCA ACTTTGCCGA CGCCGTACTC
TGCATCCTGG CCCAGCGTCT GGTGCTGACC CTGTGCAAGG ACTGCAAGAA AAGCTACCAC
CCCAGCAAGG AAGAATATGA CGAACTGGTG CGTCTCTACG GCGGCCAGGA ACTCTTTGAC
AAGTCAATCA ACCTTCCCTT CACCGACGAC CTTGAGTTTA ACCGTCCTGC CGGCTGTAAC
GCCTGCAACA ACACCGGGTA CCGGGGCCGC ATGGGCCTTC ATGAACTCCT TATGGGCTCC
CTGGATATCA AACGGCTGAT TCAGACCCGT GCCCGGGTGG AAGAAATTCG GGAGAAAGCC
ATTCAGGAGG GCATGCGAAC CCTGATGCAG GACGGTATTG AAAAAATCTT TCAGGGGTAC
TGCGACCTGA TCATGGTGCG CAAGGTGTGT ATTTCCTGA
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| Protein sequence | MAVTLSTAQT GTGAHSSSSD AEYRRKVQEV NKRIFSAANL DEILIDIKED IIDLFAAQRI
TIYYVDGIKR ELVSRYKSGE EVEEIRVPLS PDSIAGFAAY KQRMVNIKDV YNQRELVKID
PALSFDEKWD RRSGFTSKQI LVAPILFKKM LIGAIQLVNR KDGKPFTEED ERNLTELAET
MGIGLYNQKK MAAAKKGRRN KYDHLMENHI LTQKELTRAV TLARENSQTV EEVLIKEFNV
PKDELGTSLA KYYDAPYRPY DKGTPIPGEL LGGLKVPFMK NNTWVPLCTT PEGDIQIAID
NPHDIQRVNE IKALFTGKRI KFCVSFKEDI YDFIELFTTD EVETSSIDDI LSKMQEEEEE
IEDTSMGVSE ESSAIVQLVN KVIIDAYNRG ASDIHIEPYP GKGNTEVRIR VDGRCTLYQT
IPYHYKNAVA SRIKIMSDLD IAEKRKPQDG KIKFKKYGGL DIELRVATVP TQGGLEDIVM
RILAAGEPIP LSKMGFSKHN YDNFITCVTR PYGIIFVCGP TGSGKTTTLH SALKYINKVE
TKIWTAEDPV EITQRGLRQV QVKPKIGFDF AAAMRAFLRA DPDVIMVGEM RDKETTHIGI
EASLTGHLVF STLHTNSAPE SITRLLDMGM DPFNFADAVL CILAQRLVLT LCKDCKKSYH
PSKEEYDELV RLYGGQELFD KSINLPFTDD LEFNRPAGCN ACNNTGYRGR MGLHELLMGS
LDIKRLIQTR ARVEEIREKA IQEGMRTLMQ DGIEKIFQGY CDLIMVRKVC IS
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