| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_0245 |
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| Symbol | |
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| ID | 5693063 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 274010 |
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| End bp | 277126 |
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| Gene Length | 3117 bp |
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| Protein Length | 1038 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641262825 |
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| Product | HsdR family type I site-specific deoxyribonuclease |
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| Protein accession | YP_001528132 |
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| Protein GI | 158520262 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTGAAA AACCCCGCCC TGAGCGGATT ACCCAGAATC GCGTGATTGC CCTGTTTACC
GACAAATCCC GGCCGGATTG TCTTGGGTAT CAATACCTGG GTGACTGGAG CAAGCGCGAC
AACAACCGGC CCGTTGAGGC GGAGTATCTC CGGGCGAACC TGAAAAAGCG CGGCTATTCG
GACGCCCATA TTTCAGCCGC TCTGCTGCAA CTGGAAATCG CCGCCGGCAC CACCGGGGTG
ACGCTTTACC AGGCCAATCT GCGCACCTAC AATCTGCTGC GCTACCCGGT GAAGGTGCTG
CTGGCGCCGG GCCAGCCGCA CGAGGATGTG CATTTGATCG ACTGGGAACA TCCTGAAAAC
AATGATTTTG CCCTGGCCGA GGAAGTGACC CTTAAAGGTG GCTACGAGCG GCGGCCCGAC
CTGGTATTGT ACATCAACGG CATGGCCATT GGCGTGATTG AACTCAAGCG CAGCTCGGTG
GAGGTGGCCG ACGGGGTTCG CCAGCTCATC ACCAACCAGG AAAAGATATT CAACGAGGGT
TTCTTTTCCA CGGTGCAGCT TGTGTTTGCG GGCAGCGATT CTCAAGGCTT GCGTTACGGC
ACCACCGGCA CGCCGGAGCA GTTCTTTGTT CAATGGAAAG ACGAGGAAGG CGACAGTGCG
CTTGCGCCCG GCACCCTGCT TGACAAGCCC CTGGCCCAGA TGTGCAACAA AAAGCGGTTG
CTGGACCTGA TTCGCAACTG CATTATTTTC GATGCCGGGC AGAAAAAGGT GCCCCGGCCC
CATCAGTATT TCGGTTTTAA GGCTGCCCAG GAGAGAATCC GCCGGCGCGA GGGCGGCGTT
ATCTGGCACA CCCAGGGCAG CGGCAAAAGC ATCCTCATGG TGTTGATCGC CAAATGGCTG
ATGGAACACG ACCCTGACGC GCGTATTCTG GTCATCACGG ACCGGGACGA ACTGGACAAA
CAGATTGTGG ATGTAATGCG AAACGCCGGG GTGGTCGGCG AGGACGCACC TTCGCCGCGC
ATTACCTCGC GGGCGCAGTT TGTCGAAAAG ATCGGTGCGA CAACGCCGCG CCTGCTCTGC
GCTCTGATTC ACAAGTTCGA GACGACCGAC CTGAAAGGCA ACCCGCCGCC GATTCACGGG
CGCTTCTACA TTTTTGTGGA TGAATGTCAC CGCACCCAGG GCGGGGACAT GAACCGGCAG
ATGAAACGGT GGATGCAGGA CGCGATTTTT ATCGGCTTTA CCGGCACCCC GCTTTTGCGC
CGGGACAAAT TGATGACCCG GGATGTTTTT GGAACCTACA TTCACACCTA TAAATTCCAC
CAGGGCGTGG CCGACAAGGT CATTCTGGAC CTCAAGTATG AGGCCCGCAA TGTGCCGCAG
CGCCTCACTT CCCAAAAAGC CATTGACGCC TGGTTTGAGC AGAAGACAAA AAACCTGAAC
AATTTTCAGA AGGCCATTGT AAGAAAAACC TGGGCCACCA TGGAAAAGCT GATGAGCGCG
GGCGAGCGCA AGCAACGCAT TATTGCCGAT ATCATCCAGG ATTTCAGCCT TAAACCGCGC
CTGAACAATG ATCGCGGCAC CGCCATTCTG GTGACGGCCT CGATTTACGA CGCCTGTCAC
TATTTCCGGC TGTTTCAAAA CACCGGCTTT GGCGCGTACT GCGGCATCAT CACCTCTTAC
GAGCCGAACG CCAACGCCAT TTCCAAAGAA CCGGCCAACA GCAATGAGCG CTACAAGTTT
GACACCTATA AGCAGTGTGT TTTGGATGCG TTTACCACAA CGGAAAAATA CGAGGCGGAA
ACCAGGCGGC GCTTTATTGA AGAGCCGGCC AACTGCAAGC TGCTGATCGT GGTCAGCAAA
CTGCTGACCG GGTTTGACGC CCCCTCCTGC ACCTATATCT ATCTTGATAA TGAGATGCAT
GACCACACCC TGTTTCAGGC TATCTGCCGC ACCAACCGCC TGGATGGTGA CGACAAGGAG
TATGGCCACA TTGTCGACTT CAAGGAGCTG TTCGGCGATG TGCAGCAGGC CATTGCCGTT
TACAATTCCG ATGAGCTGGA TATAGACGAG GGCGGCGGGG GGGAGAACAA CATCCACCTG
AAGGACTGGC TGAAAGAGGG CAAAAAGAAA CTTGATGACA CCCGCGAGGC CCTGAAGTAT
CTCTGCGCGC CGGTTCCCGA GCCGCGTGAA ATGGAGCAGT ATCTTTTCTA TTTCTGCGGC
AACGCCGATA ATCCGAACGC GCTTACCGAC ACAGAGGCCC TGCGCGTATC GTTCTACAAG
TCAGTGGCCA CGTTTGTGCG GGCGTTTGCC GCTGTTTCCC AATACCTGGC CGAGGCGGGG
TATTCGGCCG CTGAAATTGC CACGCTGAAC AACGAGGTCA AATTCTTCAG TGATACGCGG
GCGGCCATTA AAAAACATTC CGGCGAAGAG TTGGACATCA AGCCCTATGA AGCGGACATG
CGTCATCTGC TCAACACCTA TATTCAGGCT GATCCGGCCG ATCCACTGGG CGAAATGGAC
CGGTACTCGC TGGTGGAACT TATCATCAAA ACCGGCATTC ATGACGCCAT TGCAAAAAAA
CTCAACGAAA AGGGAAAGCT GTCAAAGACC GCGGTTGCCG AGGGCATTAT CCACAACATC
CGCAAGACCA TCATTCGGGA GCAGTTGGCC GATCCCCGAT TCTACGAAGA GATGTCCAAG
CTGTTGGATG ATCTGATCAA ACAGCGGCAG GATGATACAA AGTCCTATGA AGAATTTCTC
AAACAGGCCG AGGCCCTGGT TAAAAAAATG TCCAAGGGGC AGCCTGGGAA AAATATTCCC
CAGGAACTTC ACGGAAGGCC CGAAGCAACC GTGATTTACA ATAACCTGCC GGATATTCTG
ATGCACCTTG CGTCCGAAGA CATGGTTCAG GATCCGGTAA CCGGCTTCGG CGCTACCCGG
CTCGGGCTTG CCCTGGAAAT CGACCGCGCC ATGCGGGAAC ACGCACCGGC CGGATGGAAG
GGGGATGACA CCCGGGAAAA ACAGGTTTTA AATGCGTTGT TTCCCCTTTT AAAACGGAAT
CGCAAGGCAA CGATGGCGGC GTTTGAACTC ATAAAAAACA TGTCGGGTTA CGCATGA
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| Protein sequence | MPEKPRPERI TQNRVIALFT DKSRPDCLGY QYLGDWSKRD NNRPVEAEYL RANLKKRGYS
DAHISAALLQ LEIAAGTTGV TLYQANLRTY NLLRYPVKVL LAPGQPHEDV HLIDWEHPEN
NDFALAEEVT LKGGYERRPD LVLYINGMAI GVIELKRSSV EVADGVRQLI TNQEKIFNEG
FFSTVQLVFA GSDSQGLRYG TTGTPEQFFV QWKDEEGDSA LAPGTLLDKP LAQMCNKKRL
LDLIRNCIIF DAGQKKVPRP HQYFGFKAAQ ERIRRREGGV IWHTQGSGKS ILMVLIAKWL
MEHDPDARIL VITDRDELDK QIVDVMRNAG VVGEDAPSPR ITSRAQFVEK IGATTPRLLC
ALIHKFETTD LKGNPPPIHG RFYIFVDECH RTQGGDMNRQ MKRWMQDAIF IGFTGTPLLR
RDKLMTRDVF GTYIHTYKFH QGVADKVILD LKYEARNVPQ RLTSQKAIDA WFEQKTKNLN
NFQKAIVRKT WATMEKLMSA GERKQRIIAD IIQDFSLKPR LNNDRGTAIL VTASIYDACH
YFRLFQNTGF GAYCGIITSY EPNANAISKE PANSNERYKF DTYKQCVLDA FTTTEKYEAE
TRRRFIEEPA NCKLLIVVSK LLTGFDAPSC TYIYLDNEMH DHTLFQAICR TNRLDGDDKE
YGHIVDFKEL FGDVQQAIAV YNSDELDIDE GGGGENNIHL KDWLKEGKKK LDDTREALKY
LCAPVPEPRE MEQYLFYFCG NADNPNALTD TEALRVSFYK SVATFVRAFA AVSQYLAEAG
YSAAEIATLN NEVKFFSDTR AAIKKHSGEE LDIKPYEADM RHLLNTYIQA DPADPLGEMD
RYSLVELIIK TGIHDAIAKK LNEKGKLSKT AVAEGIIHNI RKTIIREQLA DPRFYEEMSK
LLDDLIKQRQ DDTKSYEEFL KQAEALVKKM SKGQPGKNIP QELHGRPEAT VIYNNLPDIL
MHLASEDMVQ DPVTGFGATR LGLALEIDRA MREHAPAGWK GDDTREKQVL NALFPLLKRN
RKATMAAFEL IKNMSGYA
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