Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DhcVS_647 |
Symbol | dapF |
ID | 8657580 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides sp. VS |
Kingdom | Bacteria |
Replicon accession | NC_013552 |
Strand | - |
Start bp | 605192 |
End bp | 606046 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | |
Product | diaminopimelate epimerase |
Protein accession | YP_003330115 |
Protein GI | 270308057 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.55502 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATTCA CTAAACTGCA AAGTGTTGGC AATGACTTTG TTCTGGTAGA CCCGCAAGGT GAAGAACGGG ATTGGCCAAA ACTGGCACTC CATATGTGCC ACCGTCATTT CGGTGCCGGT GCTGACGGGC TGATGTTGCT TTTGCCTTCA GCAAAAGCAG ATTTCCGCAT GCGGATTTTT AATGCAGATG GCTCTGAGGC AGAAATCTGC GGTAACGGTT TGCGCTGTCT TATTCATTAC ATAGTCGCCA ACAAATTGAT TGGCAGCAGA GATGAACTTA GCATTGAGAC TCTAGCCGGT ATACGGCATG CTCAAATATT TAAAGACGGA CGCATACGCA CCACCATGGG CAAACCTATG TTTGAAGCCC ATCAGATACC TGTTGCCGCT GAACCAGACC CTAAACACTA CAGCGGACAA CTTATTTCTG ACTTTCCGCT AAATATCAAT AACCGCCGGG TACTGGTTTC ACTGGTATCC ATGGGAAACC CGCACGCTAT TCATTTTTGC ACTAAACCGG TAGAAGAATT CCTGCTGGGA GAAGTGGGCT CATTGGTTGA AACCCACAAG GCATTCCCCA AACGCACCAA TTTCGAAGTT GCAAATATCC TTGATACCGA ACATATAAAA GTACGGGTTT GGGAACGAGG GGTAGGGGAA ACTCTGGGTT GCGGCAGCGG TGCTTCTGCA GTAGCGGTTG CCGCGCAGAT ACTGGGATAT GTCGGTAAGT TTGTTTACAT AAAGTTGCCG GGCGGAACAC TCGGCGTTGA ATGGGATGGG CATGATGATG TCTATCTTAC CGGAAAAGCT GAAATCATAT ATACGGGAGA ATGGTTGAAA GATGAAATTG TCTAA
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Protein sequence | MKFTKLQSVG NDFVLVDPQG EERDWPKLAL HMCHRHFGAG ADGLMLLLPS AKADFRMRIF NADGSEAEIC GNGLRCLIHY IVANKLIGSR DELSIETLAG IRHAQIFKDG RIRTTMGKPM FEAHQIPVAA EPDPKHYSGQ LISDFPLNIN NRRVLVSLVS MGNPHAIHFC TKPVEEFLLG EVGSLVETHK AFPKRTNFEV ANILDTEHIK VRVWERGVGE TLGCGSGASA VAVAAQILGY VGKFVYIKLP GGTLGVEWDG HDDVYLTGKA EIIYTGEWLK DEIV
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