| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_4481 |
|---|
| Symbol | |
|---|
| ID | 7261510 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | - |
|---|
| Start bp | 4756991 |
|---|
| End bp | 4758904 |
|---|
| Gene Length | 1914 bp |
|---|
| Protein Length | 637 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 643564398 |
|---|
| Product | Ig domain protein |
|---|
| Protein accession | YP_002460918 |
|---|
| Protein GI | 219670483 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2247] Putative cell wall-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.174755 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTTTAAAT GGAAGAAGAT GGCTGTATTT TTGGTCAGCT TAGGGATATT TACCTTAACA
GTGGCGCAAA GCACCGATGC AGCAGTACTG AGTTCGCGAG TCGCCGGGAG TGATCGTTAT
CAAACAGCGA TCGCCGCCAG CCAAAGTGGC TGGCCTACAG GGTCTGCTGC AGTAGTCATC
ACCACCGGTG AAAATTATCC TGATGCTCTG AGCGCCGCGC CTTTGGCGGG GAAATATGAT
GCACCGCTGT TACTGACGGC ACGCACAGGA TTAAGCCCGG AGGCTATAAC AGAATTAAAG
CGACTAAAAC CCAAAAATGC CTATATTGTT GGCGGGCTCG GAGTGATTCC CTCCCCGGTG
GATAAGCAGA TTGCGGCCCT GGGCATCACG GTGAAGAGGT TCGCAGGGAA GGATCGTTAT
GACACGGCCC TGGCGGTGGC CAGGGAGGTG GGCACCAAGG AAGGTATTTT CGTCACCTCA
GGACTAGAGT TTGCCGATAC CTTGGCTGTG GCACCTATCG CGGCGGCTAA AGGTATGCCG
ATTTTGCTGG TTCCTAAGGA CGAAATGACC GCAAATCTGG AAAACTATCT AGGAAGACTG
AGAAATACCG AGATTGTGAT AGTTGGCAGT GAAAGGGAAG TTGCCAAAAC TATTGAAAAT
AAGCTTCCTG AAGGAACACG GATCGGAGGG GCTGATGCTT ATATACGTAA TATTGCTCTT
CTCCGGTATT ATGAGGATTC ACTCGACGCG ACGAAGATCT ATGTGGCCAC AGGGGAGTCT
TTTCCGGATG CCCTTGGAGC GGCAGCTCTC GCCCAAAAAG GTGACCATGC TTTAATTTTG
GTGAAAGGAA ATCAGATTCC GCCTACTGTG CAAAACTATC TTAGCGCCAA GGTCGTTAGT
GAAATAACTG TTTTCGGCGG AACGGGGGTT ATTCCGGCGA AGACGGTGGA ACAATTAGCT
GCCTTACCGG CGGAGATCGA TGAAGTCAAA AATATCACCG TTAATGTTAA GGAGAAAGAA
ACCTACAATC TGCCCGGCAA AGTAACGGTG ACTACGAATA AAGGCAACCT GGTAGAGGTA
CCGGTAACTT GGAATCTGGA TAATGTATCC ACCCAAAAAG CGGGCACCTA TTATTATCGT
GGCGAGATTG AGGGGTATTA CACCACAGTA GAGTTAACTC TGAATGTTGA GCCTGTAATC
AGCAGGGCGG ATACCTTTAC TGCCGAAGTC GTGCAGGGAA GTAAATATAA CCTACCGGAG
TCAGTAATAG TTACTCTGAG CGACCAAACC AACAAGAAGT ATCCGGTCAT TTGGAGTTCG
ACGCCCACTG TGAGTATGTT AAATAAGGTA GGCACCTATA GCTTCCAAGG TACAGTCGGG
GAAACTGGCC TGACAACGAC GTTGACCCTG AAGGTATCTG AGGATTCAGC AATTAAGTTT
AATGATTCGA ATTTGGAATG GGCAGTGAAG TTCATGATGG GAAAAAATGC CTCCACCCAG
CCAATCTACC TCAGTGATGT GTTAAGTCTC ACCCACTTCG ATGCCGAGGG CTATGGCATC
AAAGATCTGA CCGGCATGGA GCGCTTTACT AATCTTCAGT CGCTGAATCT GCGCAATAAC
CTTCTTGTAG GTTCCAAGCT CGCTCCCCTG CAGAAGCTGA GCAATCTGCA ATCATTAAGC
CTTGCCTTTA ACGACTTGGA GCAGGTTACT TCTCTCAAAA GCCTGAATAA TTTAACCTAT
TTAGAGCTGC AGGGTAACAA TATTTTAGAT TACGCACCCA TTAAAGACAT GACAAGGCTA
ACCGGTTTAT TCCTTAAAGG AAACCCTTCC CACGATTATA GCCCTACCCG GGGGTTTTAC
GATCAGTTAG CGGAGAAAGA TTTTGACTTA GATGCGGTCG ATTATCTCAA GTAA
|
|---|
| Protein sequence | MFKWKKMAVF LVSLGIFTLT VAQSTDAAVL SSRVAGSDRY QTAIAASQSG WPTGSAAVVI
TTGENYPDAL SAAPLAGKYD APLLLTARTG LSPEAITELK RLKPKNAYIV GGLGVIPSPV
DKQIAALGIT VKRFAGKDRY DTALAVAREV GTKEGIFVTS GLEFADTLAV APIAAAKGMP
ILLVPKDEMT ANLENYLGRL RNTEIVIVGS EREVAKTIEN KLPEGTRIGG ADAYIRNIAL
LRYYEDSLDA TKIYVATGES FPDALGAAAL AQKGDHALIL VKGNQIPPTV QNYLSAKVVS
EITVFGGTGV IPAKTVEQLA ALPAEIDEVK NITVNVKEKE TYNLPGKVTV TTNKGNLVEV
PVTWNLDNVS TQKAGTYYYR GEIEGYYTTV ELTLNVEPVI SRADTFTAEV VQGSKYNLPE
SVIVTLSDQT NKKYPVIWSS TPTVSMLNKV GTYSFQGTVG ETGLTTTLTL KVSEDSAIKF
NDSNLEWAVK FMMGKNASTQ PIYLSDVLSL THFDAEGYGI KDLTGMERFT NLQSLNLRNN
LLVGSKLAPL QKLSNLQSLS LAFNDLEQVT SLKSLNNLTY LELQGNNILD YAPIKDMTRL
TGLFLKGNPS HDYSPTRGFY DQLAEKDFDL DAVDYLK
|
|---|
| |