| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5554 |
|---|
| Symbol | |
|---|
| ID | 8229169 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 6681349 |
|---|
| End bp | 6682236 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 644933400 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003089909 |
|---|
| Protein GI | 255039288 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.579466 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAAAG TATGGTTCAT TACAGGCAGC GCCCGCGGAT TGGGACGCAG CCTTGCAGAG
GCAGTTTTGA AAAGCGGTGA TCAGGTGGTG GCTACCGCAC GGAATATCGC TCAGCTGGAT
GGCCTCGCGG CGGAATTCGG GGAACAAATT TATCCGGTAG CGCTGGACGT GACCAACTAT
GAGCAGGTTT ACCACGTGGT AGCCGATGCG GTTGCCCATT TCGGCCGCAT CGACGTGCTG
GTGAATAACG CAGGGTTTGG CATCATCGGA GCGGCCGAGG CATACACCGA AGAGCAGGTG
CGCAGCCAGC TCGAAACCAA TCTCTACGCA CCCATTGAAA TCACCCGGGC GGTGCTGCCG
TACATGCGCA GGCAGGGCAG CGGACGCATT TTGCAGATCA GCTCGGTAGG CGGTCGGGTA
GGTAACCCTG GCCTCACGAT GTACCAGGCG GCCAAATTCG GCCTGGGCGG TTTCACGGAG
GCGCTTGCCA AAGAAGTAGC GCCGCTGGGC ATATTCGTCA CCAGCGTCGA GCCGGGCGGT
TTCCGCACCG ATTGGGCAGG GGCTTCTATG ACTTACGCCC GCGTGATCGA AGGTTATGAA
ATGGTCAACC AGCGTACGGA GTATTTCAAA TCGGGGAATT TCGTGCCGGT GGGCGATCCT
GAAAAGGCTG CGGCGGTGAT GGTGGCCCTA GCAGCGCACC CCGCACCGCC CGTCCATCTG
GTACTTGGCA GCGAGGCCAT TGGTATTCTC AAAAACGCCG ACGAAGCCCG GAAGGCCGAA
ATGGAAGCAT GGCTGGACGT GAGCCTTTCG ACAGACCATG ATGAATCGGA AGACTTCCTG
AGTACCTCGA TGGGCAAATG GTACACCGGC GCTAAAACCA ATGCTTAA
|
|---|
| Protein sequence | MTKVWFITGS ARGLGRSLAE AVLKSGDQVV ATARNIAQLD GLAAEFGEQI YPVALDVTNY
EQVYHVVADA VAHFGRIDVL VNNAGFGIIG AAEAYTEEQV RSQLETNLYA PIEITRAVLP
YMRRQGSGRI LQISSVGGRV GNPGLTMYQA AKFGLGGFTE ALAKEVAPLG IFVTSVEPGG
FRTDWAGASM TYARVIEGYE MVNQRTEYFK SGNFVPVGDP EKAAAVMVAL AAHPAPPVHL
VLGSEAIGIL KNADEARKAE MEAWLDVSLS TDHDESEDFL STSMGKWYTG AKTNA
|
|---|
| |