Gene Dfer_5538 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_5538 
Symbol 
ID8229153 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand+ 
Start bp6667767 
End bp6668396 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content57% 
IMG OID644933385 
Productputative transcriptional regulator 
Protein accessionYP_003089894 
Protein GI255039273 
COG category[K] Transcription 
COG ID[COG2345] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value0.912326 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.622551 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAATA CGCCGTCCGG CTCTGATCGC GTGATATGGA TGCTGAAAAC AGCCGGTCCG 
CAGCCATTAA CGACCATCGC GGCGGAGTTG AATATCACCA CGGAAGGTGC TCGTTTTCAG 
TTGTTAAAGC TAGCCGGAGA AGGACTTGTG CAATCTTCCA CAGTATCGAA GGGCCGCGGA 
CGTCCGCAGC AGATATGGGC ATTGACCAAG GAAGGAGAGG GGCGTTTCCC GGACGCGCAC 
GCGGAGCTTA CGGTGAAGCT GATCAGCACT ATCCGCGAAA CGCTGGGCCA GGATGCGTTG 
CATGCGGTCA TCGAGGCCAA CAGCCAGAAC GGCCTGCGCA AATATATGCA TGAAGTCGGC 
AGCGCTCCCC AGCTCGAAGA GCGCATTGCC CGGCTGGCCG GTATCCGCGA TCAGGAGGGA 
TATATGGTAG AGTATGTGAA AGACGAAGAA GGTTATCTGC TGATCGAGAA CCATTGTCCG 
ATCTGCGCGG CTGCCACTGC CTGCCAGGAT TTTTGCCGTT ACGAACTGAA AACCTTCCAG 
GCTGTGCTGG GCGATCAGGT GGATGTCAGG CGTGTAGACC ACATCCTGGC AGGCGCGCGG 
CGTTGCGCCT ACCGTATCAG CGAGAAGTAA
 
Protein sequence
MKNTPSGSDR VIWMLKTAGP QPLTTIAAEL NITTEGARFQ LLKLAGEGLV QSSTVSKGRG 
RPQQIWALTK EGEGRFPDAH AELTVKLIST IRETLGQDAL HAVIEANSQN GLRKYMHEVG 
SAPQLEERIA RLAGIRDQEG YMVEYVKDEE GYLLIENHCP ICAAATACQD FCRYELKTFQ 
AVLGDQVDVR RVDHILAGAR RCAYRISEK