| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5405 |
|---|
| Symbol | |
|---|
| ID | 8229016 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 6525607 |
|---|
| End bp | 6526338 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644933250 |
|---|
| Product | two component transcriptional regulator, LytTR family |
|---|
| Protein accession | YP_003089763 |
|---|
| Protein GI | 255039142 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 53 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.379459 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGTGC TGATCGTAGA GGATGAAGAG CTCAGCGCGG AGCGCTTGCA GAACCTAATA
CGGAATATCG ATCCCTCCAT CCATGTCCTG GCCATCATTC CGTCGGTGTT TGAAACCATT
GCTTACCTTC AAAATGCCGC GAACACGCAG CCGGACCTAA TTTTCCTCGA TGTCCACCTA
GAAGACGACA ACGGTTTCCG GATCATCGAA AACCAGGATC TCATGATCCC GGTCATTTTC
ACCACCGCAT TCGACGATTA CCTGCTGCGC GCATTCAAAA CCAACAGCAT CGATTATCTG
CTGAAACCCA TTAATCCGCT CGAATTGCAG GCTTCGCTGA ACAAATTCAG GCGGATAAGG
AGCAATGAAG AGGTGAAGAA GGCGGACGTG AAATACAAGG ACCGTTTCCT GGTCACCGCC
GGCCCGAGGG TATTTACATT CAAAACTTCC GAAATCGCGT ATTTCACCAT CGAAGAGCGC
GCCACGTTTC TCCGGTTGTT CGACGGCCGG CATTTTGCGG TCGAATACAG CCTCGAAAAG
CTCTCCCAAA TGCTCGACCC GGCCGAATTT TTCCGGATCA ACCGCCACAT GCTGCTCTCG
CTGCACGCTA TCCGCGAAAT GCACGCAATT TCGGCAGGGA AGCTCAAAAT CGACCTCCAC
CCGGCCGCTG CGCAGGAAAC TTTTGTGAGC GCCGAGCGCA TGACCGAGTT TAAAAATTGG
CTTGGTAAAT AA
|
|---|
| Protein sequence | MNVLIVEDEE LSAERLQNLI RNIDPSIHVL AIIPSVFETI AYLQNAANTQ PDLIFLDVHL
EDDNGFRIIE NQDLMIPVIF TTAFDDYLLR AFKTNSIDYL LKPINPLELQ ASLNKFRRIR
SNEEVKKADV KYKDRFLVTA GPRVFTFKTS EIAYFTIEER ATFLRLFDGR HFAVEYSLEK
LSQMLDPAEF FRINRHMLLS LHAIREMHAI SAGKLKIDLH PAAAQETFVS AERMTEFKNW
LGK
|
|---|
| |