| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5304 |
|---|
| Symbol | |
|---|
| ID | 8228915 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 6401411 |
|---|
| End bp | 6403849 |
|---|
| Gene Length | 2439 bp |
|---|
| Protein Length | 812 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644933149 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_003089662 |
|---|
| Protein GI | 255039041 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.144104 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGATTTC AATACCGTTT CCTTCTCCCT CTTCTGATTG CATTGCTGAT TTCAAAAACC
GGCCTTGCCC AGTCTCTTCC TTGTTACCTG ATCAAAGGCG TGCTCATCGA TTCGGCCACT
TCAAAAGCCA TTGAATTTGC GACCATCAGC ATCCTCGATG ACCAGCAGCA GGTAGTAGCG
CTGACTTATT CGGACGAAAG CGGCATTTTC AAATCCACCG ACATAAAGAC CGGCTCCTAT
TTCCTGCACC TTTCGTTCGT AGGCTACCGC CAGAAACGTC TGCCATTTAA GATCACCTCA
ACCACGCCCT ATGATTTCGG TACGGTGAGG CTGATCTCCG ACGTGAAGCA GCTGGACGCC
GTGACCGTTA CGGGCATGAA GCAACTCGTT GAACAACAGC CCGGAATGTT GATTTATAAT
GCGGAAAAGG ACATTAGTAA CCTCGGCGGT ACCGCTGCCG ACGTGCTCCG AAAAGCGCCT
ATCCTGAATG TGGACGCCGC CGGCAACGTG ACCATGCGCG GAAACTCCAA TTTGCGCATT
CTCATCAATG GAAAATATTC CGGCCAGATG GCCCGCAACG CCGCCGATGC ATTGAATATG
ATGCCGGCAG GTTCGATCAA ATCTGTGGAG GTGATCACCA GCCCTTCGGC ACGCTATGAT
GCGGAAGGTG CGGCGGGCGT GATCAATATC ATTACAAAAA AGGGCAACCA AAGCACCAGC
GGCACGATTG AAGTCGTGGG TGGGAATCTC GAACAGGCCA TTAACCCGCG TATCGCCATA
AACCGCGACA AGTGGAATGT CAGTTCCACG CTGCATTTGC ACCGCTTCCG AAACAAGGAA
CTGGCGAGCG TGGACCGCAC TACATTTGAA AATGGCGCAG AAACCGGTAA AGTCCGCCAG
GAGATTGTGC GCGACAATGC CAAACCACAC AGCTCCGGCG ATGTGCAGAT CGAGTACCTG
GCCGACAGCG CCAATGTTTT TAACTTCTCC GTAAATGGAT GGCTCGGCAG CTGGCCGCAA
AACAGCGAAC AACGCAACAG CCGCCTTTCG CCCAACGGCG CGATCATCGA CCAGTTTCAC
CAATCCGTTA AAACCAAAGC CCCGAGCAAG GGCATCGACC TGAATTTGGG GTATACCAAA
AAATTTAAAA AACCGGGCGA AGAACTATAC CTGATGGCGC AGCACAACCG CTCGACCGAC
GATTTCAACT ACAATGCCAC CCAGCGCGAC GACGAGCAAT TCCTCATTTA CCGCGAAACC
AATGATAACA CGACGCACAA CAGCGAATGG ACGTTCCAGG GCGACTATAT TCTGCCGCTC
ACGCCGTCGG GTAAGCATGC ATTGGAAAGT GGTGTAAAAG CGATTTTGCG CAACGTTGGC
AGCGATTACA AGGTGCAGAC CAGCGAAAAC GGCAGCGCCG ATAACCTGGC CATTGTCCCG
TCCCGCACCG ACCGCTTCGA CTACCGCCAG GACGTGCTCG CGGCATACAG CCAGCTCAAA
TTCAAATGGA GCAGCGGCTG GGCCTTGCAC GCAGGAGCAC GTATGGAAGG CACATTCCTG
GAAGGCGACC AGCGCGACGC CAAGGTGCAT TTCACGAGCA GTTTCTGGAA TTTCGTGCCC
AGCGCGACCA TTTTCAAAAA GCTCGACGCG AATAATAACC TCACATTGAG CTACACCAAA
CGCATTTCAC GGCCGTCGAT CTGGGACCTG AACCCGAACC GCGACAGCCA GGACCCGAAG
AACATCGTAG TGGGCAATCC CTCACTGAAA CCGGAGGAGG TGAACCAGGT GGAATTTACC
TACGCATTGC AAACCAACAG CGACCTGTTC GTGAACGTGT CGGCATTCGG CAGGAAAACG
AACAATTCCA TCGAGAGCAT CGTGACGATG GACGCCGAGG GTGTGGCCAC CACCACGAAA
CAGAACCTGG CCTCGAATGC GCAATACGGC GTGAATTTCT CGGCATCTTT CTCCCTCCTG
CCCGACTGGA AGATCAATAG CAACGCCAAC ATCCGCCAGG CGCGCTTCAA AAGCGGAGCG
CTCGGCATCG ACAACAAAGG GGCAGCCTGG GGCATTAACC TGAACACCAG CTGGAAACTG
CCTAAAAATT ACAGCGTACA GGCATACGGC GACTACGACG CCCGCAGCAT CGAACTGCAA
GGATTCGAGG GTGCATGGCT TTATTACAGC TTTTCGGCCA AAAAGGAGCT GCCTGCGCGT
AAGCTCACGA TCACGCTTAC CACTGTGAGC CCGTTCGGCT CTTACCGCCC GCAAAAACAG
GTAGTAAGTT CGCCGGAATT CTATTCCATC ACGCGCAACC AATACCTGAT GCGCTCGGTG
AAACTTTCCC TGAACTGGGA ATTTGGCGGG TTGTTCAAGC AGGGCGCGGG GCGCAAGATT
AATAACGACG ACCTGAAAAA TGTAAAAACG GGAGGATGA
|
|---|
| Protein sequence | MRFQYRFLLP LLIALLISKT GLAQSLPCYL IKGVLIDSAT SKAIEFATIS ILDDQQQVVA
LTYSDESGIF KSTDIKTGSY FLHLSFVGYR QKRLPFKITS TTPYDFGTVR LISDVKQLDA
VTVTGMKQLV EQQPGMLIYN AEKDISNLGG TAADVLRKAP ILNVDAAGNV TMRGNSNLRI
LINGKYSGQM ARNAADALNM MPAGSIKSVE VITSPSARYD AEGAAGVINI ITKKGNQSTS
GTIEVVGGNL EQAINPRIAI NRDKWNVSST LHLHRFRNKE LASVDRTTFE NGAETGKVRQ
EIVRDNAKPH SSGDVQIEYL ADSANVFNFS VNGWLGSWPQ NSEQRNSRLS PNGAIIDQFH
QSVKTKAPSK GIDLNLGYTK KFKKPGEELY LMAQHNRSTD DFNYNATQRD DEQFLIYRET
NDNTTHNSEW TFQGDYILPL TPSGKHALES GVKAILRNVG SDYKVQTSEN GSADNLAIVP
SRTDRFDYRQ DVLAAYSQLK FKWSSGWALH AGARMEGTFL EGDQRDAKVH FTSSFWNFVP
SATIFKKLDA NNNLTLSYTK RISRPSIWDL NPNRDSQDPK NIVVGNPSLK PEEVNQVEFT
YALQTNSDLF VNVSAFGRKT NNSIESIVTM DAEGVATTTK QNLASNAQYG VNFSASFSLL
PDWKINSNAN IRQARFKSGA LGIDNKGAAW GINLNTSWKL PKNYSVQAYG DYDARSIELQ
GFEGAWLYYS FSAKKELPAR KLTITLTTVS PFGSYRPQKQ VVSSPEFYSI TRNQYLMRSV
KLSLNWEFGG LFKQGAGRKI NNDDLKNVKT GG
|
|---|
| |