Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_5055 |
Symbol | |
ID | 8228662 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 6109834 |
End bp | 6110886 |
Gene Length | 1053 bp |
Protein Length | 350 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644932903 |
Product | Xylose isomerase domain protein TIM barrel |
Protein accession | YP_003089420 |
Protein GI | 255038799 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACAA TAAAAGGACC CGGTATCTTC CTCGCCCAAT TCCTTGGCGA TGAAGCTCCG TTCAACTCAT TGGATACCAT CGCCGACTAC ATGGCAGGAT TGGGCTATAA AGGCCTCCAA CTTCCTACCT GGGACCCGCG TGTGATTGAC GTGAAGCAGG CGGCTGAGTC GCAGACCTAT GCGGATGAGC TGAAAGGTAA ATTGGCAGAC AAAGGTTTGC AAATCACAGA ATTGGCTTCG CACATTATCG GTCAGCTGGT GGCTTCGCAC CCGGTTTATG ATGAAATGTA TGATAATTTT GCCGTTCCCG AGGTTCGTAA CAACCCGAAA GCGCGTGCGG AATGGGCTAC GCAGCATTTG AAACTCGTGG CGCAGGCAAG CCGCAGACTG GGCCTGAAAG CTTCTGCTAC CTTCTCCGGT GCATTGGCGT GGCCTTTCCT TTATCCGTGG CCTCAGCGCC CTGCGGGTTT GGTGGAAACG GCTTTCAAAG AACTGGCTGC CCGCTGGAAG CCGATTCTGG ACGTGTATGA CGAAAACGGT GTAGACGTGG CGTATGAGCT GCACCCGGGC GAGGATCTGT TCGACGGTAC TACTTTCGAA ATGTTTGTAG ACTACCTCGA CGGCCACACC CGCGCGAATA TCAACTACGA CCCGAGCCAT TTCGTGTTGC AACAATTGGA TTACCTCCAA TTCATCGACC TCTATCACGA CCGCATCAAG GCATTCCACG TGAAAGACGC GGAATTTAAC CCAAGCGGCA AGCAGGGCGT GTACAGCGGC TTCGCAGGCT GGGCCGATCG CGCCGGACGT TTCCGTTCGC TGGGCGACGG CCAGGTGGAT TTCGGTAGCA TTTTCTCCAA ACTTTCTCAG TACGATTACG ACAGCTGGGC GGTTCTGGAA TGGGAATGCT GCATTAAGTC GCCCGTACAA GGTGCGGCGG AAGGTGCACC GTTCATCGAA AGCCACATCA TCGAAGTGAC CACGAAAGCA TTCGATGACT TCGCGGGAAC CGGTGCAGAT GAGGCATTTA ACCGCAAGGT TCTGGGTCTT TAA
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Protein sequence | MKTIKGPGIF LAQFLGDEAP FNSLDTIADY MAGLGYKGLQ LPTWDPRVID VKQAAESQTY ADELKGKLAD KGLQITELAS HIIGQLVASH PVYDEMYDNF AVPEVRNNPK ARAEWATQHL KLVAQASRRL GLKASATFSG ALAWPFLYPW PQRPAGLVET AFKELAARWK PILDVYDENG VDVAYELHPG EDLFDGTTFE MFVDYLDGHT RANINYDPSH FVLQQLDYLQ FIDLYHDRIK AFHVKDAEFN PSGKQGVYSG FAGWADRAGR FRSLGDGQVD FGSIFSKLSQ YDYDSWAVLE WECCIKSPVQ GAAEGAPFIE SHIIEVTTKA FDDFAGTGAD EAFNRKVLGL
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