| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4717 |
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| Symbol | |
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| ID | 8228323 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 5695911 |
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| End bp | 5699378 |
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| Gene Length | 3468 bp |
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| Protein Length | 1155 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644932566 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003089083 |
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| Protein GI | 255038462 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.80065 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCTAA CGCTATCAGC CAAGCAATGG GTGGCGATCG GGATTGTGTT GATGACGCAA
TCCTCGCGGG TCGTGCATTC ACAGGTCATT GCCTTTGCGT CGGTGCCTTC CAGGCAGCAT
ATGTCCATCG GGCAGGAAAT GAAGCTCAAA AACGTGCTCC TCGATCTGCA AAGACATTAC
GGGGTGGAAA TTATCTTCGA AGACCGTCTG GTAGGTTCCG TCAATGTCGC TTCGAGCAAC
CTGGATTTTA ACCAGCCAAT TGAGAAAAAC CTCGACCAGC TGCTGCGGCA GAACGGCCTG
AAATATAAAA AGACCAGAAA GAATACATTC GTGATCACCG AGGGCAAAGG AAAGGAAGCC
CTGCCGGGAA AGGATAACCG GGAAGAGGCG CTGGCGCTTC CCGAACAGGC GCTGAACCAG
GAGAACCTGA CGGCCCAGGC ATCGGCGGGC CAGGAGGCGG TGGACCGGAC GATCAAAGGG
AATGTGACCG ATGAGGGCGG CGCTGGCCTC CCCGGCGTGA GCGTGGTGTT GAAAGGCACG
CAGCGCGGTA CATCCACCGG CGCATCCGGG GAATTCAGCC TCGAAATCCC CGATGGCGGA
CAGCCGGTGC TGGTTTTCAG TTTTGTGGGA TACAAATCGC AGGAGGTGAC GGTGGGAAAC
CAGTCGGCCG TGAATGTGAC CATGGCGCCG GACGAGAATG CATTGGAAGA AGTGGTGGTG
GTAGGTTATG GTACGGTTAA AAAGTCCGAT CTGACGGGCG CGGTAGGGAC CCTCAAAGCG
GAAGTTTTGC AGGAACGCCC GGCGTCGTCC CTCAACCAGG GGCTTTCGGG CCGCATTACA
GGCGTGAACG TGTCGTCCAA CTCGGGCCGG CCGGGTGGGC GCGCGAACAT CCGCATTCGC
GGGGCGAGCT CCATCAGCGT GTCCAACAAC CCGCTTTACG TGATCGATGG CGTGATCCTG
AATGCGGTTG ACCTGCAAAA CGGCAGTACG CCCATCGACT ACCTCAACCC GAACGACATC
GCGTCCATCG AGGTGTTGAA AGATGCTTCG TCAACGGCCA TTTACGGTGC GCGCGGTGCA
AACGGGGTAA TCCTCGTAAC AACCAAACGC GGTACATCGG GCGGCGGAAA GGTGACTTAC
GACACTGATT TCAGCATTGG TGTGGCTCCC CGCAAGCTGC CTGTTTTGAA TTCGAGGGAA
TTTTTGCAGG TAGAAGAAAC CCTTTATGCC AATGCAGCCA AATATGATCC CGTGGGCTGG
GCTACCGGCA CCAAATACAC CGATCCCAAA CTGAAACGGA CCAATCCGCT GCTTTTCGAC
TCGAACGGCA ACCCGCTTTA CGACACCGAC TGGCAGAAAG AAGCTTTCCA GAAGGCATTT
ACTCAAAATC ACCAGCTGGG CTTTACCGGC GGCAACGAAA AAGGCAGCTT CGGGGCGTTC
CTGAACTACC GCAACGAGGA TGGTATCATC AAAGAATCGT GGCAAAAGCG CTTCTCAGGC
CGTTTGGTGT TTGATTCCCA AATCAAAAGC TGGCTGAAAG TGGGCGGTAC GCTGGGCTAC
ACCGATCAGA ACGAAAAGCA GATCGACCAG CTGGGCGGCG GTGGTATCAC GGCCATGCGC
CAGGTGCTGG AAGCGTTGCC GATCATCCCG GTGAAATATC CCGACGGAAG ATGGGCCAGC
AACCGCGATT ACCCGGGAAT GGAAGGCGGC GACAGCCCGC TGCGCGTGGT GAATGAGCGC
CTTTTTTACC TCAAAACACA AACCATGCTG GGGAATATGT ATGCCAATAT CCGTCTTGCC
GACGGTTTGG AACTGCGTTC GACGGTGGGT GCCAACGTGA TCAACCAGCG TAACGACTAT
TTCGCGGCTG CCGGGTTGCA GTACATTACC AGCAATGGCG AGGCCTGGGT GATCAATAAC
CGCTATAATT CGTGGCAATT TGAAAACTAC CTGACGTATT ACAAAGACTT CGGCAAGATC
CACTCGATCA ATGCGATGGT CGGTTTGTCG TGGCAGCACG TCGATCGTTT CGATAACCAG
GCACGCGCCC AGAACTTTAC GGACACTTAT TTCCAATACA ATAACCTCTC CGCGGGGGCC
ATCGCCATAG CACCGACTTC CCGCGCCGAA GCGTACGGTT TGAACTCTTA CTTCGCCAGG
ATCAATTACA GCCTGATGAA TAAATACCTC GTAACGTTTA CAGGCCGTAT GGATGGCTCG
TCCAAGTTTG GTGATGCCAA CCGGTATGCA TTCTTCCCGT CGGCGGCAGT GGCCTGGCGT
GTGAATGAGG AAGAGTTTCT CAAAAACTCG AACTCGATCT CCAACCTGAA AATCCGCGCG
AGCTACGGTG CTACCGGTAA CTCTGAAATC CCCGCCTACC GCGCGCTTGC CGGTATGGCC
AGCTCGGATG TCATTTTTGG CGGCACGCGT AATATCGGTA TCGGCGTAGG CCGGATGTCG
AATGCGAACC TGCAATGGGA AAAAACACAG CAAGTGGATT TGGGGATTGA ATTGGGATTG
TTTCAGAACC GCGTGAGCTT CGAACTCGAT CTCTACCGCC GCAAAGTGAA TGAAATGTTG
CTGGATGCGC CACTACCGTC GAGCAGCGGC TACACGAGCA TTTTTACCAA TATCGGCAGC
ATGGAAAACA AAGGGGTCGA ATTCGCGGTG AACTCGACCA ATATCAAAGC CGGGGACTTC
TCTTGGAATA CCACATTCAA TATTTCCGTG AATAAAAACA AGGTGCTGGC GCTTTCGGGC
GGCAGCGATA TCTTCTCCGG CGCAACGGTA ATACGCGTAG GTGAGCCCGT CGGGTCGTTT
TTCGGACGCG TGCACCAGGG AATCTGGTCT ACTTCGGAAG CGGAGGAAGC CAAAAAATAC
AACATGCTGC CCGGTGACGT GAAGTACGCA GACCTGAACA AGGACGGCGC GATCAACGAC
AACGACCGTG CGATCATCGG TAAAGGTATT CCCGACGGCT TCGGTACGTT CCTGAACACA
TTCAGCTACA AGCAATGGTC GCTGACCGTC GATTTGCAAT ACATGTACGG CAATGACGTG
CTCGACAGAA GTATCCACTC CGCGGAGGAC CGCCAGGGTA TCGCTAACAG CTACAAAACA
GTGCTGAATG CATGGACGGA AACCAACCAG AACACGCCGA TTGCACAGGT ACGCCCGATT
AACGCCTACT ACACGACCAA CAACGACAGC CACAAGGTAA CCGACGCTTC GTTTATCCGC
GGCCGTAACC TTCTGTTGGC CTACGTGTTC CCGACCAATG TGGTTTCGAA GTTGAAGCTG
GACCGTCTGA GAGCTTATGC TTCCATTCAG AACTTCTTCG TGGCGACCAA GTACAAAGGC
TATGACCCGG AAGTGTCCAA CTCCTCATCG CCTTTCGACC AGGGATTGGG TTTGTATGAC
TATCCAAAAC CAAGAGTATT TATGCTCGGC TTGAATATCG GTTTATAA
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| Protein sequence | MNLTLSAKQW VAIGIVLMTQ SSRVVHSQVI AFASVPSRQH MSIGQEMKLK NVLLDLQRHY
GVEIIFEDRL VGSVNVASSN LDFNQPIEKN LDQLLRQNGL KYKKTRKNTF VITEGKGKEA
LPGKDNREEA LALPEQALNQ ENLTAQASAG QEAVDRTIKG NVTDEGGAGL PGVSVVLKGT
QRGTSTGASG EFSLEIPDGG QPVLVFSFVG YKSQEVTVGN QSAVNVTMAP DENALEEVVV
VGYGTVKKSD LTGAVGTLKA EVLQERPASS LNQGLSGRIT GVNVSSNSGR PGGRANIRIR
GASSISVSNN PLYVIDGVIL NAVDLQNGST PIDYLNPNDI ASIEVLKDAS STAIYGARGA
NGVILVTTKR GTSGGGKVTY DTDFSIGVAP RKLPVLNSRE FLQVEETLYA NAAKYDPVGW
ATGTKYTDPK LKRTNPLLFD SNGNPLYDTD WQKEAFQKAF TQNHQLGFTG GNEKGSFGAF
LNYRNEDGII KESWQKRFSG RLVFDSQIKS WLKVGGTLGY TDQNEKQIDQ LGGGGITAMR
QVLEALPIIP VKYPDGRWAS NRDYPGMEGG DSPLRVVNER LFYLKTQTML GNMYANIRLA
DGLELRSTVG ANVINQRNDY FAAAGLQYIT SNGEAWVINN RYNSWQFENY LTYYKDFGKI
HSINAMVGLS WQHVDRFDNQ ARAQNFTDTY FQYNNLSAGA IAIAPTSRAE AYGLNSYFAR
INYSLMNKYL VTFTGRMDGS SKFGDANRYA FFPSAAVAWR VNEEEFLKNS NSISNLKIRA
SYGATGNSEI PAYRALAGMA SSDVIFGGTR NIGIGVGRMS NANLQWEKTQ QVDLGIELGL
FQNRVSFELD LYRRKVNEML LDAPLPSSSG YTSIFTNIGS MENKGVEFAV NSTNIKAGDF
SWNTTFNISV NKNKVLALSG GSDIFSGATV IRVGEPVGSF FGRVHQGIWS TSEAEEAKKY
NMLPGDVKYA DLNKDGAIND NDRAIIGKGI PDGFGTFLNT FSYKQWSLTV DLQYMYGNDV
LDRSIHSAED RQGIANSYKT VLNAWTETNQ NTPIAQVRPI NAYYTTNNDS HKVTDASFIR
GRNLLLAYVF PTNVVSKLKL DRLRAYASIQ NFFVATKYKG YDPEVSNSSS PFDQGLGLYD
YPKPRVFMLG LNIGL
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