Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_4257 |
Symbol | |
ID | 8227860 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 5152471 |
End bp | 5155014 |
Gene Length | 2544 bp |
Protein Length | 847 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644932104 |
Product | phage shock protein C, PspC |
Protein accession | YP_003088624 |
Protein GI | 255038003 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG1983] Putative stress-responsive transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.198729 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGA CAATCAGCAT AAATATAGGC GGCATTATCT TCCATATCGA GGAAGATGGC TACGAGAAAC TGAAAGGCTA CCTCGCGTCT ATCCAGAAAT ACTTTTCGTC GTTCGCGGAT AGCAAGGAGA TCCTTTCGGA CATTGAGGGC AGGATTGCGG AGCGGTTTTT AAACAAACAA AAAGCAGAGA ACAAGCAGGT AATCTCGCTA TCGGATGTCG ATGAGCTGAT TGCCGCGATG GGTACCGTGG CCGATTTCGA GGCGATCGAA GAAGGGGGCG AGTTCATCAC CGATCCGCTC GAAGCCGCTT CCACATCCAC TTCGGCACCA AAACAGGAGG CTTATACTTC CTACCAGGCA CCCATTCCGC CCAAAACGGA GCCTGCAAGG CCAGCTGGCC CCAAAAAGCT CTTCCGCGAT CTTCGGAGAA AACTCCTCGG GGGCGTGGCG GCCGGTCTGG CGCATTACTT CTCGGTGGAC CCGATCTGGG TGCGACTTGC CTTCCTTTTC GCGGTGGTAG GCCTGCCTGC CGGTTCAGGA ATGCTCGATA TGCATAATGC CGATGAGGTT TTCGGACCGG TGTCGGGCTT TATGGTGCTG GTTTACATTG CCATGTGGGT TGCTTTTCCG GGTACTACTA CATTGGAGGA GGATACCCAT ATCAAAAAAT TCTACCGTGA TCCGGACCGC AAGGTGGTGG GTGGCGTGGC GGCCGGTGTG GCTTCCTATT TCGGGGTCGA CCTGGGTGTG GTGCGTTTCC TGTGGGTGCT GTCGATCCTG CTTTTTGGAA CCGGTTTCCT GATTTACATC GTGCTGTGGG TGATCGCGCC CACGGCCAAT ACGCTCACCG AAAAAATGGA AATGCAGGGG GAGCCTATTA CCCTCTCCAA TATTGAGTCG AACATCAAGC AAAGCCTCAA TTTGGAAGAA AGAGGGGGAG AAGAGCATAT CGCCACCAAA ATTCTACTGT TTCCGTTCCG CGCCATCGGA TTGATCTTCT CGGCGGCGGG GAAGCTGCTG AAAGGGCTGG GGCCAATTGT GCGGGTTTTG ATCGGCGTAT TCCTGATCGG TATCTCGGCA TCGGGATTGC TGGGGCTGGT GGTAGCCGCC GGGATCGCGC TCGGGCTGAC GAGCGCCGGG GCATTCGATA ACCTGCCGCT TCCGTTCGTG ATTTACCAAG AGTTGCCTGA AATACTTATC ATCTCGGGGA TTTTCGTAGC AGCCATTCCA TTAATTACAT TCCTTTTGCT CGGTTTGACG CTCGTTTCGA ACAAGCGGAT CGTCGGCGGG AGCGTTTGGC TTACCCTGCT CGGCCTCTGG ATCGTGGGCG TGATCGGCGC GACTGTCGGC GGTGTTTCGT ACCAGCAGAA CTTTGCGAAA AGAGGGGAAA TCGTTGAAAA CGAATATTAC CAGGCACCAA GAGGAACGCT GGTGCTGAAT TTCGATTATG ACAACGACGA GGAGAATATC GACGTCGACC TGCGGCTGAC CGGCGCTAAC ACCAGCGACA GCATCAGATT GGAAAAAGTC CTGAAAGCAC GCGGCCGGAC TCGCGAAAGT GCCGAGCAGA ATGCCCGGGA TATCCGTTAC AGCCCGTCGC TCAAAGATTC GGTATTCACA TTTACCGAAG GGCCGCTTAT CGCCGGCCGC ACCAAGTTCC GCGACCAGGA GATTGACCTC ACATTGAGCA TTCCTTATAA CAAACCGTTC GTGATGACCC GCGACTTCTA CTTTTTGCTG AGCGATTGGG AGCCCGAGCA ACGCAACCTG AAACGTTACG ATCTGGGACA CAATGACGAA GTGGTTTGGA ATAGTCTGAT ATGGGAAATG CGCCGCGATT CGGGACTGGT TTGTACGAAT ATTCCTTTGA AATACATCCG TAGCGAGAAT TCCGGTGACG ACCGCTCCGA CTATGGGTTC GATTACAACG ACAACAGCGG CCTGGACCTG GGCGAACGCG GCAATTACAG TAAGCAGTTC CCGGTTTCGG ATTTCAAAAA AGTGGACATT GGCGGGGCTT ATTCCATTAT CATCCGCCAG GGGACGGAAT ACATGGTTAC CGCCGACTCG GACAATCAGG AGAATATCGA CGACATCCGG GTAGTGGTGG AAGACGGTGT GCTGCGCGTG AAACGTTCGC GTGATTTCAA CCTCTTCGAC GATCACGACT GGCAGCGCGT AGGCCTGGTG ATTACCATGC CCACCATTGA GCACTTGTCG CTGTCGGGCG CCAATAAAAC GCTCGTTACC GAGTTCAAAG ACCTGCCCAA GCTGGACGTA GAGGTTTCGG GCGCATCCAA ATCGGAGCTG AATGTGTTCA CGGACCAACT TTCAGTGAAT ATCTCCGGCG CTTCCAAAGC TACGCTGCGC GGTCTGGCCA AAACGGCTAA GCTCGATGCC CACGGCGCCT GCAAGCTCAC GGCCACCGAA ATGAATATCC AGAATGCCGA TGTGAACGCA TCGGGCGCTT CGAAAGTGGA ATTGAGCCAT GTGCCAAACC TGAACCGGCA CGCCAGCGGC GCAAGCAAGA TCAATGTGCA GTAA
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Protein sequence | MKKTISINIG GIIFHIEEDG YEKLKGYLAS IQKYFSSFAD SKEILSDIEG RIAERFLNKQ KAENKQVISL SDVDELIAAM GTVADFEAIE EGGEFITDPL EAASTSTSAP KQEAYTSYQA PIPPKTEPAR PAGPKKLFRD LRRKLLGGVA AGLAHYFSVD PIWVRLAFLF AVVGLPAGSG MLDMHNADEV FGPVSGFMVL VYIAMWVAFP GTTTLEEDTH IKKFYRDPDR KVVGGVAAGV ASYFGVDLGV VRFLWVLSIL LFGTGFLIYI VLWVIAPTAN TLTEKMEMQG EPITLSNIES NIKQSLNLEE RGGEEHIATK ILLFPFRAIG LIFSAAGKLL KGLGPIVRVL IGVFLIGISA SGLLGLVVAA GIALGLTSAG AFDNLPLPFV IYQELPEILI ISGIFVAAIP LITFLLLGLT LVSNKRIVGG SVWLTLLGLW IVGVIGATVG GVSYQQNFAK RGEIVENEYY QAPRGTLVLN FDYDNDEENI DVDLRLTGAN TSDSIRLEKV LKARGRTRES AEQNARDIRY SPSLKDSVFT FTEGPLIAGR TKFRDQEIDL TLSIPYNKPF VMTRDFYFLL SDWEPEQRNL KRYDLGHNDE VVWNSLIWEM RRDSGLVCTN IPLKYIRSEN SGDDRSDYGF DYNDNSGLDL GERGNYSKQF PVSDFKKVDI GGAYSIIIRQ GTEYMVTADS DNQENIDDIR VVVEDGVLRV KRSRDFNLFD DHDWQRVGLV ITMPTIEHLS LSGANKTLVT EFKDLPKLDV EVSGASKSEL NVFTDQLSVN ISGASKATLR GLAKTAKLDA HGACKLTATE MNIQNADVNA SGASKVELSH VPNLNRHASG ASKINVQ
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