| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4175 |
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| Symbol | |
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| ID | 8227773 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 5038509 |
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| End bp | 5041808 |
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| Gene Length | 3300 bp |
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| Protein Length | 1099 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644932018 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003088543 |
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| Protein GI | 255037922 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000931261 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGATGA TGATAAGCGC CCCGGTTTTC GCCCAAACGA TTACCGGTAA AGTTTCCAGC
AGCTCCGACG GCGCCACGCT CCCCGGAGTT TCGGTGCTGG TGAAAGGTAC TACCACCGGT
ACTACCACAG ATGCCGATGG TAAATACAGC ATTGCAGCAC AGGGAAATTC TACCCTCGTG
TTCTCTTACA TCGGTTACAA AACGCAGGAA CTTGCTGTTG GAAACGGTAG CGTGCTGAAC
GTAACCCTGG TTGAAGATGC CTCAAACTTG CAGGAAGTAA CTGTAACGGC CTTGGGTATC
CCTAAGGAGT CACGTGCGCT GGGTTACGCT ACTTCGACGA TCAAAAGCGA GACGCTTATC
AAAACCGCTA CACCAAACTT CGCAACCGCG TTGTACGGTA AGGCTCCGGG TTTGACCATC
AACGCTACTC CGGGTGGAGC AACGTCAGGT GTGAGCATCA GCATCCGCGG TTTTAGCTCG
ATCACCGGTA ACACTCAGCC CCTTATCGTT CTTGATGGTA TCCCCATCCG TAACGGTGAA
GCGCAAAACG GTGATTACTG GGGCGACCAG CGTATCCGCG GTAACGGTCT TCTTGACTTG
AACCCTGCTG ATATCGAAAA CATTACGGTA TTGAAAGGTG CATCTGCGGC TGCATTGTAC
GGTTCGGAAG CGGTAAACGG GGTTCTCCTT GTAACTTCTA AAACCGGTAA AGGAAGAAAA
GGTCTTGGTG TTGATTTCAG CGCTAGTTAC AGTGTTGATA AAATCGCTTA CCTGCCACGT
TACCAGAATG TAAGAGGTCC GGGTTACATG AAAAACTACC TCGATGGTGG TCAGGATGCC
AACGGCTTCA TTATGTATGA TACCAATGGC GACGGCGTAG GCGACACAAG AGGTCTGTTG
AACGCTACGG TGAACTTCGG TCCTAAGTTC GACGGACAGC CTGTGATGGC ATTCGACGGA
AAAATCCGCC CTTACTCGGC ATCCGGAAAC AGCTATGCGG ATTTGTTTGA GAACGCAAGC
AGCTCAAACA TCAACCTTTC GGTATCCAAA GGCAGTGAGA ACTCGACCAT TCGTTTCTCT
TTCACCCGCC AGGATAACGG AATGATCAGC TACAATGCCA AGAACAGCAA GAACATCGCC
AACCTGAATG CCAGCTTCAA TGTAAACAAG AAGCTGACGA CCGATTTGAT GGTGAACTAC
ATCAACCAGA AGACGCACAA CCGTCCGTTC AAGGTGGATC GTATGATCAA CAACTTCACC
GGTATGATGA ACCGTTTCGA GTCTGCTGAC TGGTATTTCG ATAAATATCA AACCAGCCAG
GGCTACAAAT ACGTAACGCA GGCATCCGGT AACCCAAGTT TGACTCCGGA AGAGAACATC
CGATTCAATG GTTTCAAATC CGATATCGCG GATTACGTTT GGAATACCAG AAGAAATACT
TCTGACGAAT GGAGCGACCG TGTGATCGCC AGCATTACAC AACACTGGCA GATCACCGAC
GAATTGAAAC TCCGTGGCCG TATCGGTGCT GACGTTACCG GCGAGCGTAT GGAAAACAAC
AATGCTACCG AAAGGCCGCT GGCATTCGGT TACTCAGGCG GTTTCAGCAT GGCTAACAAC
GCTTACAGAA ACGTTTACGG TGAGGCTTTG TTGACCTACA ACAAAAAACT GACCGACGAT
GTGTCATTGG CATTGATGGC AGGTTACAAC GCTTATAAGC AAGCCAACAC CCGAATCAGT
TCAAGCACTG AAGGTGGATT GAGCACTGAG AACTTCTTCG ACCTGTCGGC GTCGGTAAAC
AACCTGAGCG TTACAAGAAG CCGTGACCGC TGGACCCGTG ACGCGCTTTT GGGAACTGCC
CAGTTCGACT TCAGAGGCTT CATTTTTGTG GAAGGTACCG TTCGTAGGGA CCGCACTTCT
ACACTCGCCC CAGGCAACAA TGCATTCGTT TATCCTTCTG TGAACGCATC GTTCGTGTTC
ACCGATGCCC TGGATCTGCC GGCTTTCTTT AGCTATGGTA AATTGAGAGG ATCTTGGGGT
GAAGTGGGTA ACTATCCGCA GATCTACGCT GCAAACGTAG CTTATCAGCA AGGTAGCTTG
AACGTTCAGC AAAATGGCGG CCAGTCGGTA CTTTATACTA CTATGGCTAA CGCCTACGGT
AACGACAAGA TCCGTCCTGA AAGAAAGCGT GAATTTGAAT TCGGTTTGGA GACTAAATTC
TTCAACAACC GTATTGGCCT CGACATTGCA TACTATAATG CACAGATCGT AGACCAGATC
CTTCCATTGT CGATCGCTTC GTCATCAGGA GCACGCTCGA TCCTTGCTAA CGTAGGTACT
TTGAGAAACA AAGGTTTGGA AGTTGCGTTG AACGTGTCGC CTATTCAGGG TAAAACTTTT
AACGATTTCA ACTGGGATCT GACTTTGAAC CTTGCGAAAA ACGTAAACAA AGTAGAGAAA
CTGGCTAACA ACTCTACCGA GTTGCTGCAC TCCGACCTTG ATGGTAACGC TGCCCAGATC
CGTTCGGTAG TAGGCCAGCC AATGGGTGAC ATTTATGCGC ACGGTATCCT TACAAACGAG
CAAGGCCAGA AAGTAGTAGG ACCGAACGGT CTGTACCAAC TGGACGGAGC AAACTGGATC
AAAGTAGGTA ATGCAATGCC TAAACTGACC GGTGGTTTGG TGAACAGCTT CTCATGGAAA
GGCTTCACAC TCGACGCGAT CACAGATTTC CGTTTCGGTG GTTCTATCAT GCCAACCGGT
ATCAACTGGA TGACCTCACG CGGTTTGACA GAAGAAAGCT TGAAATACAT GGACGCGGCG
AGCGGCGGTT TGAGCTACTA CCAGGATGCG AATGGAAAAG GTGTACCAAC CACGGCTGCA
ACAGGTCCTA ACGGCCAGAC TGTATACCAC GACGGTATGC TGATGGAAGG TGTACTCGCC
AGCGGCGAAG CTAACACCAA CATTGTGTCA CAGGCGGTGT ATTACAATGC TACTTACAAC
TGGGGTGGTC CACAGTACGG TAACTCACGT TACGAGCTGT ACGTTAAGAA AAACACTTAC
ATCAAAATGC GCGAGCTTTC ATTGGCGTAC CGCCTGCCAT CGTTTATCGG TAGCAAAATC
GGTGCTTCGA ACGTGACGGT TTCGGTATTC GGACGTAACC TGTTCTTCTT CTACCGTACC
ATCAAAGACC TGGATGCTGA ACAGACCAAT GTTTCTACAA AATGGTATGA AAACATCAAC
AACGCCGGAT CTAACCCATC TTTCCGTACT GCGGGTGTAA TGTTGAGAGC CAGCTTCTAA
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| Protein sequence | MLMMISAPVF AQTITGKVSS SSDGATLPGV SVLVKGTTTG TTTDADGKYS IAAQGNSTLV
FSYIGYKTQE LAVGNGSVLN VTLVEDASNL QEVTVTALGI PKESRALGYA TSTIKSETLI
KTATPNFATA LYGKAPGLTI NATPGGATSG VSISIRGFSS ITGNTQPLIV LDGIPIRNGE
AQNGDYWGDQ RIRGNGLLDL NPADIENITV LKGASAAALY GSEAVNGVLL VTSKTGKGRK
GLGVDFSASY SVDKIAYLPR YQNVRGPGYM KNYLDGGQDA NGFIMYDTNG DGVGDTRGLL
NATVNFGPKF DGQPVMAFDG KIRPYSASGN SYADLFENAS SSNINLSVSK GSENSTIRFS
FTRQDNGMIS YNAKNSKNIA NLNASFNVNK KLTTDLMVNY INQKTHNRPF KVDRMINNFT
GMMNRFESAD WYFDKYQTSQ GYKYVTQASG NPSLTPEENI RFNGFKSDIA DYVWNTRRNT
SDEWSDRVIA SITQHWQITD ELKLRGRIGA DVTGERMENN NATERPLAFG YSGGFSMANN
AYRNVYGEAL LTYNKKLTDD VSLALMAGYN AYKQANTRIS SSTEGGLSTE NFFDLSASVN
NLSVTRSRDR WTRDALLGTA QFDFRGFIFV EGTVRRDRTS TLAPGNNAFV YPSVNASFVF
TDALDLPAFF SYGKLRGSWG EVGNYPQIYA ANVAYQQGSL NVQQNGGQSV LYTTMANAYG
NDKIRPERKR EFEFGLETKF FNNRIGLDIA YYNAQIVDQI LPLSIASSSG ARSILANVGT
LRNKGLEVAL NVSPIQGKTF NDFNWDLTLN LAKNVNKVEK LANNSTELLH SDLDGNAAQI
RSVVGQPMGD IYAHGILTNE QGQKVVGPNG LYQLDGANWI KVGNAMPKLT GGLVNSFSWK
GFTLDAITDF RFGGSIMPTG INWMTSRGLT EESLKYMDAA SGGLSYYQDA NGKGVPTTAA
TGPNGQTVYH DGMLMEGVLA SGEANTNIVS QAVYYNATYN WGGPQYGNSR YELYVKKNTY
IKMRELSLAY RLPSFIGSKI GASNVTVSVF GRNLFFFYRT IKDLDAEQTN VSTKWYENIN
NAGSNPSFRT AGVMLRASF
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