Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_4100 |
Symbol | |
ID | 8227698 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 4952492 |
End bp | 4954384 |
Gene Length | 1893 bp |
Protein Length | 630 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 644931943 |
Product | TonB-dependent receptor |
Protein accession | YP_003088468 |
Protein GI | 255037847 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.975186 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGATCCTGC TCGCTTGCCG TGCATTAGCT TGGCCGGTTT ACGCGCAGAC GGATTCCGTG GCGCTGGAAC CGGTTGTAAT CAAGGGTTTT GTGCCGGAGA AATTCATGAG CGGTCTCAAA ATCCAGCGCA TCGACTCCGT TCCGCTTGCC CAATTGCGTT TTCAGAACAT CGGCGACATA TTGTCGGCGT ACACCCCCAT TGCTTTCAGG AATTACGGAC CGGGGCAGCT GAGCACAGCG TCGTTCCGCG GCACGTCCGC CAACCACACG GCAGTTCTCT GGAACGGGCT GAACATCAAT GCACCTACCC TTGGACAAAC GGACTTTTCG ACTATCCCAG TGGCTGGTTT CGACCAGCTT TCGGTCCAGT ATGGCTCGGC AGCGAGCATT GTGGGCTCCG ATGCCGTAGG CGGAAGCATT TTGCTGGAAA GTAATTCGTC GGTCAGCCCC TTTCAGATTT CGGCGGGCAG GCAGAGGGAA AGCTTTGACA ATCACCAAAC CCAGGCCGAT GCCCGGTATG CATGGTCGTT GAGCAATCGG TGGACGTTTT CCGGAAAAAC CGGGATTTAC AACAGCAGGA TGAACAATAA TTATCCGAAA CCGACCCGAA GGACCTACGC GCTGCTGCCT ACCGAAACTT TTCAGAAAGG CATTGTGCAG GATTTGTTCC TGCGCTCGCG AAGCGATCAG GAGATCTCGG CACATATATG GCTTACAGAC AACAAATTAG TCCTTACGCC CGATGACTTG CAAGGTCGTG AAATGACCCG CACCACGGCT TATCGCACCA TAGTCCGCTA CCGGATGCGG ACGCTCACCT TACGTTCAGC CTGGGTACGC GATATTATCG ATTATGCCAA AGGCGACATT TCCCGTCCCG ACCATTCGGT AACCGACAAG TTTGCTTCGA GAGTTGAAAA AGACTTTACG CTAAATATAG GCGAAAATGC AAATCCTGTT TACCTTAAAA CAGGTGGCGA ATGGACGCAC TACCGCTCGC GCGTGCCGGG CTACTTTCGA ATGCCCGTAA TCGAAAACCG GACGGATTTT TTCCTGCTCA CCCGCTGGCA ACCCACCTCC CGGCTCACGA CTTCGATAAA CCTCCGGCAG GGGCTTGTTA CTGGTTTCAA TCCGCCATTC ACGCCGTCCA TTGGGATGGA ATACAGCCTG GTTCAAAAAA CGCATTACCA TCTTGCATTG AAAGGCTCCT ATGGCCGCAG CTACCGTGTG CCGACGCTGA ACGAACGCTA CTGGAAAGAT CTTGGCAATC CTGATGTAAG GCCAGAAACC GGATGGAATA AGGAAGCTGG CCTGGAACAA ACATTTAAAG CTGCTTTGGG CGGCACGCTG CGCACCTCCG CCACTTTTTA CCATAACCGC ATCAAAGAGT GGACTTATTG GAATCCGTCG CGCGGCTACC GGGTCGAAAA CCTGCAACAA GTGCTCGCCC GTGGGATTGA GCTGCAAATG AACTATCAGC GGCAAAACGG ATTCTGGAAA ACCGGGATCG ATGCGGGTTA TGCATTCAAC AGAAGTAGTC AGGAGAAGGC TTATGATAAT TATTCGCAGG ACATTGTGGG TAAGCAACTG GTATTTGTGC CAGAGCATAC GGCCAATGCA AATGCATTTG TACAATACAA GTCCACGAAG CTCACCGGGC AGTTGCAGGC AGCGAGCAAG CGTTATACCA CATTCGACAA TTCGCAATTC CTGGATGGTT ACGGGCTTGT GAACCTGCTG GCCGAGACAA GTTTTGCGGT ACAGAAATGC AGGTTCCTCG TGCAGGGACA AATCCGCAAT GTTACCGACA CGTTTTATTT AAATGTCAGA AATAATGCGA TGCCGGGAAG AAGTTTTGCA TTAAGTTTAA CTTTTAGTTA CGATTCTCAA TAA
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Protein sequence | MILLACRALA WPVYAQTDSV ALEPVVIKGF VPEKFMSGLK IQRIDSVPLA QLRFQNIGDI LSAYTPIAFR NYGPGQLSTA SFRGTSANHT AVLWNGLNIN APTLGQTDFS TIPVAGFDQL SVQYGSAASI VGSDAVGGSI LLESNSSVSP FQISAGRQRE SFDNHQTQAD ARYAWSLSNR WTFSGKTGIY NSRMNNNYPK PTRRTYALLP TETFQKGIVQ DLFLRSRSDQ EISAHIWLTD NKLVLTPDDL QGREMTRTTA YRTIVRYRMR TLTLRSAWVR DIIDYAKGDI SRPDHSVTDK FASRVEKDFT LNIGENANPV YLKTGGEWTH YRSRVPGYFR MPVIENRTDF FLLTRWQPTS RLTTSINLRQ GLVTGFNPPF TPSIGMEYSL VQKTHYHLAL KGSYGRSYRV PTLNERYWKD LGNPDVRPET GWNKEAGLEQ TFKAALGGTL RTSATFYHNR IKEWTYWNPS RGYRVENLQQ VLARGIELQM NYQRQNGFWK TGIDAGYAFN RSSQEKAYDN YSQDIVGKQL VFVPEHTANA NAFVQYKSTK LTGQLQAASK RYTTFDNSQF LDGYGLVNLL AETSFAVQKC RFLVQGQIRN VTDTFYLNVR NNAMPGRSFA LSLTFSYDSQ
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