Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_4034 |
Symbol | |
ID | 8227632 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 4885082 |
End bp | 4886974 |
Gene Length | 1893 bp |
Protein Length | 630 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 644931877 |
Product | Heparinase II/III family protein |
Protein accession | YP_003088402 |
Protein GI | 255037781 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0114283 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAATGC TCCGGGACTT GTCGCTGCTT TGGCATATTG TTCGCCAAAT GGGCTGGGGA TATGTACTTT TTCGCGCTGG TTATTGGCTA GAAGGCAAAA CCGGCTTGCT CCGACTTCGT TTTCCCAAAC GATCAACCAG GCGATCGTTC ATTAGCCTCC GGGAATGGCG AGATCGCAAC CCTGCATTTC TCTTCGATCC TCATGAGGTG AATGTGAGCA GGAATGCGGG GCTTCACGAG TTGAAGTGGC GGGTTAGCCA AATCAGGCGC CGGAGGTTTC AGTATTTCAG CAGTCAATGG TTTGATGTTC ACGATTGGCA TACTAATCCG CTGACAGGCT ATCGGTACAA TGTGAATGAG CATTGGTCGC TAGTGGATGA CTTTTCGGTA ACGGCGGGAG ATATCAAATA TGTCTGGGAA AAATCGAGGT TTACATTTCT GTATGACCTC ATTCGATATG ACTATCATTT CAATGAGGAT CAATCTGCGG AGGCTTTCAC ACTGATTTCC GATTGGATCG CTCAAAATCC CGTCAATCGC GGCCCGAACT GGAAATGCAG CCAGGAAATC GCCCTGCGTG TGTTAAACTG GACTTTTGCA TTGCATTACT TTCGAGGCTC GCACGCATTG AACCAAAGTC TACTCGATCA AATACTGTGC AGCATTTACG ACCAAATCCG GCATGTTGCC CAAAACATCC GTTTTTCCAG GACTGCCGTC CGCAACAACC ATATCCTTAC CGAAGCAATG GGCCTTTTTA CAACCGGGTT AACATTCCCG TTTTTCCCCG AAAGTCCGGA ATGGGAAAAG GCAGGCAAGG AGTTATTTGA AAGAGAAATC ATCACGCAAA TCGCGCCGGA TGGAACGTAT CTGCAATTTT CCATGAACTA TCACCGGGTG GTAGTGCAAC TGCTCACCTG GGGAATCCGG CTGGGCGAGG TGCATGGCGA TTGTCTCTGC GAAACCGTTT ATGCACAGGC GAAGGCTTCG CTGGTGTTTC TGAGAACCTG CCAGGATGAT AGCAATGGTC AACTTCCTCA CTACGGGCAT TGCGACGGCG CCCTGTTTTT TCCGCTATCG GAGTGTGAGT TCAGGGATTT TCGCCCTCAA ATGGCTGCTT TGGCAAATGT GCAGGGTGTT GATTTGGGTT ATCAGACGGG AAAATGGTTG GAGGAAAGCC ATTGGTTGTG TGGACATCGC CGACCGATAG CGGCACAAAT CAATCCCCGC TGCTTGTCAA CTTTCCGGGA TGGGGGCTAC CATGTTATCC GAAATGCCGG CACAATTACA TTCCTGCGCT GCGGAAGTTA CAAGAGCCGG CCATTTCAGG CAGATAACAA TCATCTCGAT ATCTGGATAA ATGGTCGAAA TATCCTGCGC GACGCCGGAA CGTGGCTTTA CAATGCCGAT GAGGAATCGA CGCGGTATTT TTCCGGCACC CGCTCGCATA ACACGGTTAC GATCGGTGAT TTCGACCAAA TGCAGAAAGA CCGGCGTTTC ATTTGGACGC ACTGGATCAC CAGCGCCAAT GGCCAATGCG GCCGCGGCAA CGATGAATGC TGGATTGAAG CCGAGTTCGA GGGGTTTCGC CATGTAGGCA AGGATATCGT CCACAAGCGG CGTGTCATAA AGCAGGTTGG CCGGCTCCAC TGGGTAATCG AGGACTGGGT AGCGAACGTG CCGACCGGCT TGCAAGTCCG GCAGCGATGG CATCCCGATG AACATTTCAG CCGCGATTTC TGCATCCGGA CGTTCGACGA GCACGGACAT GAAATTCTTC CTGTCGTCGA CTCGGGCTGG TATTCAGCTT TTTATGGTCA TAAAATCCAA AGTAATATGC TGGTTTTCGA AACTTCCGGG AATTATTTCA AAACCATCAT CGAAAAAATA TAA
|
Protein sequence | MKMLRDLSLL WHIVRQMGWG YVLFRAGYWL EGKTGLLRLR FPKRSTRRSF ISLREWRDRN PAFLFDPHEV NVSRNAGLHE LKWRVSQIRR RRFQYFSSQW FDVHDWHTNP LTGYRYNVNE HWSLVDDFSV TAGDIKYVWE KSRFTFLYDL IRYDYHFNED QSAEAFTLIS DWIAQNPVNR GPNWKCSQEI ALRVLNWTFA LHYFRGSHAL NQSLLDQILC SIYDQIRHVA QNIRFSRTAV RNNHILTEAM GLFTTGLTFP FFPESPEWEK AGKELFEREI ITQIAPDGTY LQFSMNYHRV VVQLLTWGIR LGEVHGDCLC ETVYAQAKAS LVFLRTCQDD SNGQLPHYGH CDGALFFPLS ECEFRDFRPQ MAALANVQGV DLGYQTGKWL EESHWLCGHR RPIAAQINPR CLSTFRDGGY HVIRNAGTIT FLRCGSYKSR PFQADNNHLD IWINGRNILR DAGTWLYNAD EESTRYFSGT RSHNTVTIGD FDQMQKDRRF IWTHWITSAN GQCGRGNDEC WIEAEFEGFR HVGKDIVHKR RVIKQVGRLH WVIEDWVANV PTGLQVRQRW HPDEHFSRDF CIRTFDEHGH EILPVVDSGW YSAFYGHKIQ SNMLVFETSG NYFKTIIEKI
|
| |