| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3882 |
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| Symbol | |
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| ID | 8227477 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 4723825 |
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| End bp | 4726908 |
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| Gene Length | 3084 bp |
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| Protein Length | 1027 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644931723 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003088251 |
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| Protein GI | 255037630 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0857894 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACGA CTTATGCATC CTCTGGGACC CCGCTCCTTT TGGTCCTGAC ATTGTTGTTT
TGCCAACATT CTTTTGCACA GATTAGTTTA ACAGGCAGGA TTACCGAATC CATCACGCAG
GAGCCGCTCG CGGGCGTGAG CATTCGTATA CAAGGCAAGG TGACCGGCAC GATCACCGAT
ACAAAGGGCG AATTTGCATT GACCACCACT TCAAATCCAC CATTTTCCAT TATTGTAAGT
TCAGTTGGTT TCCAAACGCA GGAGATTGCG GTGACGGCCA GCATATCCGA CCTCGAAATT
AAAATGGTAG AGCAGCCGGT ACTTGGCAAG GAAATCGTGA TTTCGGCGTC CCGCGTGGAG
GAAAGTGTGA TGAAATCGCC CGTGGCGGTC GAAAGGCTCG ATATCCGCGG CATCCGCGAC
ACCCCTGCCA CTAATTTTTA CGATGCATTG GCTAATCTTA AAGGCATCGA CATGACGACG
CAGGGTGTTT TGTTCAAATC CATCAACACG CGCGGCTTCG GCGCCACGGG TAACCCGCGT
ACCGTGCAAA TGATCGACGG CATGGACAAC CAGGCACCCG GGCTGAATTT CCCGCTCGAT
AACATCATAG GCATTTCTGA GCTCGACGTC GAGAGCGTGG AAGTGCTCCC CGGCGCTGCA
TCGGCATTAT ATGGCCCGAA TGCGGTAAAT GGCCTCGTGC TGATGAACAG CAAAAGCCCG
TTCCTGTACC AGGGACTGAG CGCCAACCTG AAAGGCGGGA TCATGCACGA AAAGAACCGC
TCGAAAGCGA CCACGCCATT TGGCGAGGCA ACAATCCGTT ATGCGAAGGC ATTCAATAAC
AAGTTCGCAT TCAAGGTAAA CCTCTCGTAC ATCCAGGCCA AGGATTGGGA AGCCACCAAT
TATGCCAACC TCAATGTAGG CGGCAATGCA GACCCGGACC GTGGAAAAGG CACCGACCTG
GACTATGACG GAACGAACGT TTACGGAGAT GAAATCCAGA CGAATATCAA CGCAGTAGCC
AAAACACTCG CAGCGGCAGG CCAGATCCCA CAGGCGGCTG TAAATCTGGT GCCAAACACA
TTCGTGAGCC GGACGGGTTT CCGCGAGAAA GATCTTGTGG ACTACGATAC CAAAAGTTTC
AAGGCCAATG CAGCCCTGCA TTACCGCTTC AACGAGAAGG TGGAAGCCAT CGCGCAGGTT
AATTATGGTT ACGGAACAAC CGTTTACACC GGCACCGGCC GCTATTCCCT GCGCGATTTC
AACCTCACGC AGGCCAAACT AGAACTCCGG GGCGACAATT TCACGGTGAG GGCCTACACG
ACCCAGGAGC GCTCGGGGAA ATCGTACCTT TCGGGCCTCG CCGCGGTGTC CATGCTCGGT
GAGATCAAGC CGAATAACAC GTGGTTCGGG CAATATGTGG GTGCATTCGT GCAGGCGCGC
GGCGCGGGTG CCGCGGAGGC GGACGCACAC GTGCTCGCCC GGCAAACTGC CGATCAGGGT
ATGCCTCAAC CGGGCAGCGC AGCATTCACC CAGCTGCTCG ACAAATACCG GAACATGCCG
ATTGTGAATG GCGGAGGCGG TTTTGCCGAT AAAACGAACA TGTACCACGC CGAAGGTTTT
TATAATTTCA AAAATCAGGT CCGCTTCCTA GAACTGATCG CGGGCGCCAA CTATCGTCTT
TACACGCTCC GCTCTGCCGG CACTTTGTTT GCCGATACTA AGGAAGGCCG CGATGGGACC
ATCCCGATCC AGGAATGGGG CGCATTTGTG CAGGCAGGCA AAAACCTGCT CTCCGATCAT
TTGAAATTGA CCGGCTCGAT CCGCTACGAT AAAAACGAGA ATTTCGACGG ACAGTTTACG
CCCCGGGTGT CGGCGGTTAC CACATTCGGA GAGCATAATA TCCGCCTTTC CTACCAAACC
GGTTTCCGCA TCCCAACCAC GCAGAACCAG TACATCGACC TCCGAACGCC TTCGGGAACG
CTCGTTGGCG GCCTGCCCGA GTTTGATTCC CGCTACAACC TTTCCAGCGG CATCCTCCGT
CAAAACCTCT CCGAAGCGGC GGTAATGGCC GTCGTAAACA GCAACCCATC GGTCGTGCAG
AGCGCCCAGC AATATGCGAC GGTGGTGGTG ACCCAGCAGG CAACCACGGC CATTACCCAA
CAGGTGACCA CCGCGGTAAC TGCCCAGGTA ACCCAGGGCG TAGCCGCAGG CACCATCCCG
AATGACCCAG CGGCGATACA AGCCGCCATC GCAGCAGGCG TGAACCAGGC GCTTCCTGGC
GTGCTGGCTG CGCAGCTCCC CGGCATTCTG GCGAAGGAAG TGCCCGCCCT CGTGCCGGAC
CTGGCCAAAG CCTATGCGTT GGGAGAATTG CCTAAATACC AACCTGTTAA ACTCAAACCC
GAGCGCATAG CCACCTACGA GATCGGTTAC AAGGGCATTA TTGCGAAAGG GCTGTTTATC
GACGCCTACT ATTACATCAG TAAATACAAA AACCTGATCG GCGGAACGGT GATCGTGGTC
CCTACCGCTG CGGCAGCACC GGGTTTGCCG CTCGAATCGG GTATTGGAGT GGGTAGTTAT
CAGGGATTTG CGCGGACGGT GAACACGACC GAAACCATCA CCACGCGCGG TTTCGCTGTC
GGATTAAACT ACGTATTACC CAAAGGATTC AACATCGGCG GCAATGTGGC GAACAATGAG
CTGAAAGACT TCACGCCGTC GCCCGAAGTG CAGTATTCAC AGTTTAACAC ACCCAAATAC
CGGTACAATG TAAGCCTCGG CCGGCGCATT ACGAGTGCCA ATAACTGGGG CTTCAACGTG
GTTTATCGCT ATCAGCAGGC CTTTTTGTGG GAATCGAGCT TTGTGGTGCC TACCACCACG
GATGTTCCGA TATTTTCGAA CACGCGGGTG CCGGCGATCA GTAATCTGGA TGCGCAGGTG
AGCCGGAAAA TTCAGGCAAT CAAATCAATC GTCAAGCTGG GCGGGACAAA CCTGTTCGGG
AAATCGTACT TCCAGTCGTA TGCCAGCCCG AATGTGGGCA GCACCTATTA CGTGTCTATT
ATGTTCGATG AATTGCTGAA CTGA
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| Protein sequence | MKTTYASSGT PLLLVLTLLF CQHSFAQISL TGRITESITQ EPLAGVSIRI QGKVTGTITD
TKGEFALTTT SNPPFSIIVS SVGFQTQEIA VTASISDLEI KMVEQPVLGK EIVISASRVE
ESVMKSPVAV ERLDIRGIRD TPATNFYDAL ANLKGIDMTT QGVLFKSINT RGFGATGNPR
TVQMIDGMDN QAPGLNFPLD NIIGISELDV ESVEVLPGAA SALYGPNAVN GLVLMNSKSP
FLYQGLSANL KGGIMHEKNR SKATTPFGEA TIRYAKAFNN KFAFKVNLSY IQAKDWEATN
YANLNVGGNA DPDRGKGTDL DYDGTNVYGD EIQTNINAVA KTLAAAGQIP QAAVNLVPNT
FVSRTGFREK DLVDYDTKSF KANAALHYRF NEKVEAIAQV NYGYGTTVYT GTGRYSLRDF
NLTQAKLELR GDNFTVRAYT TQERSGKSYL SGLAAVSMLG EIKPNNTWFG QYVGAFVQAR
GAGAAEADAH VLARQTADQG MPQPGSAAFT QLLDKYRNMP IVNGGGGFAD KTNMYHAEGF
YNFKNQVRFL ELIAGANYRL YTLRSAGTLF ADTKEGRDGT IPIQEWGAFV QAGKNLLSDH
LKLTGSIRYD KNENFDGQFT PRVSAVTTFG EHNIRLSYQT GFRIPTTQNQ YIDLRTPSGT
LVGGLPEFDS RYNLSSGILR QNLSEAAVMA VVNSNPSVVQ SAQQYATVVV TQQATTAITQ
QVTTAVTAQV TQGVAAGTIP NDPAAIQAAI AAGVNQALPG VLAAQLPGIL AKEVPALVPD
LAKAYALGEL PKYQPVKLKP ERIATYEIGY KGIIAKGLFI DAYYYISKYK NLIGGTVIVV
PTAAAAPGLP LESGIGVGSY QGFARTVNTT ETITTRGFAV GLNYVLPKGF NIGGNVANNE
LKDFTPSPEV QYSQFNTPKY RYNVSLGRRI TSANNWGFNV VYRYQQAFLW ESSFVVPTTT
DVPIFSNTRV PAISNLDAQV SRKIQAIKSI VKLGGTNLFG KSYFQSYASP NVGSTYYVSI
MFDELLN
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