| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3406 |
|---|
| Symbol | |
|---|
| ID | 8226985 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 4163214 |
|---|
| End bp | 4164599 |
|---|
| Gene Length | 1386 bp |
|---|
| Protein Length | 461 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644931237 |
|---|
| Product | Na+/solute symporter |
|---|
| Protein accession | YP_003087781 |
|---|
| Protein GI | 255037160 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0591] Na+/proline symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.183888 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGCCG TTTCCATCCT GGCATATCTG CTCGCCAATC TCGGAATCGG ACTCTGGGCC
TCCAAAAGAA TCCATTCCAC GCAAGACTTC GTTCTCGCAG GGCGCAGGTT GCCGCTGGTC
CTGGCCGCTT CGGCCACATT TGCAACCTGG TTTGGGTCGG AAACCATCAT GGGTGCCCCC
ACCGAATTTG TCGAGAATGG CGTGCTGGGC ATTATCGAAG ATCCATTCGG CGCATCGCTG
TGCCTCCTGT TGGTAGGACT TTTCTTCGCC CGCAGGTTTT ACAAAATGAA TATCATCACA
TTCTGTGATT TTTTCAGGCT GCGCTACGGC CGCAATGCCG AGCTCCTCTC CGCCATGCTC
ATCATTCCGT CCTATTTCAG CTGGATCGCC GCGCAGTTGC TTGCGATGGG TATTGTGCTG
AAAGTCGTGC TGGGCTGGTC GCTGCTGACC TGCATTCTGG CCAGCTCTTT TGTTGTAATA
CTTTACACCA TCTGGGGCGG CATGTGGTCC ATATCGATCA CCGATTTTGT GCAAACGCTC
ATGATCATCG TAGGTTTGCT GGTGGTGGCG GCGGTATTGT ATCAGAAAGT CGGTGGTTTT
CAGCCGCTGA TCGATAAGGC GCCGCCAGGG TTCTTCCGCT TTTTTCCGGA AAATACATTG
AAAGGCCATC TCGAATACTT CGCCGCCTGG ATCACGATCG GGCTCGGCTC GATCCCGCAG
CAGGATGTTT TCCAGCGGGT GATGTCGGCC AAATCGGCCC GCGTGTCGGT ACAGTCTACG
CTGTTATCCT CGCTCATGTA CCTCACCATT GCCCTCCTGC CGCTGTTTAT CGGGCTTTGC
GGGCATCATT TGTATCCGAA CGAGGAGCAG GACGGGCAGA TGATCATCCC CAACATGATT
TTGAAACACA TGAGCCTGCC GCTTCAGATA TTGTTTTTCG GGGCACTCGT TTCGGCCATT
CTAAGCACAA CCAGCAGCGC GATCATGGCG CCGGCAGTGG TGCTGGGAGA GAATATTTTC
AAATTTTTCA ACCCAAAACT CGACGACCGC CAGCTGCTTA AAATCATTCG TACAGGGATC
ATCGGTATCA CGGCCATATG CATTTTTATG GCTGCCACGC GCGAGAGCAT TTTCGAACTG
GTGGCCGAAT CGTCGGCATT CAGCCTCGTG TCATTATTCG TTCCGCTGGC CGCGGGGCTT
TACTGGAAAT CCAGCAATGC GCTCGGCTGC TACCTTTCGA TGATCGCCGG CCTGGTTGTC
TGGCTGGTTT GTGTTTATAT AGAAACCGAG TATCCCGCAC TTATTTATGG TCTTCTCGCG
AGCTTTCTGG GAATGGTAGC CGGCTGGTTT TGGGACAAAA TTAGCCCGTC ACCAACCGCC
TCCTGA
|
|---|
| Protein sequence | MLAVSILAYL LANLGIGLWA SKRIHSTQDF VLAGRRLPLV LAASATFATW FGSETIMGAP
TEFVENGVLG IIEDPFGASL CLLLVGLFFA RRFYKMNIIT FCDFFRLRYG RNAELLSAML
IIPSYFSWIA AQLLAMGIVL KVVLGWSLLT CILASSFVVI LYTIWGGMWS ISITDFVQTL
MIIVGLLVVA AVLYQKVGGF QPLIDKAPPG FFRFFPENTL KGHLEYFAAW ITIGLGSIPQ
QDVFQRVMSA KSARVSVQST LLSSLMYLTI ALLPLFIGLC GHHLYPNEEQ DGQMIIPNMI
LKHMSLPLQI LFFGALVSAI LSTTSSAIMA PAVVLGENIF KFFNPKLDDR QLLKIIRTGI
IGITAICIFM AATRESIFEL VAESSAFSLV SLFVPLAAGL YWKSSNALGC YLSMIAGLVV
WLVCVYIETE YPALIYGLLA SFLGMVAGWF WDKISPSPTA S
|
|---|
| |