Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_3315 |
Symbol | |
ID | 8226893 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 4060155 |
End bp | 4062107 |
Gene Length | 1953 bp |
Protein Length | 650 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644931146 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003087691 |
Protein GI | 255037070 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACTAC ATTACCTCAG CATCACCTTC TTTCTGTCTT GCATTGCGAG CCCCGGCCTC GCGCAGGAAA TATCGCTCGA CCCTGTTACC GTCACCTCGT CGCTCGTCGA AAAGCGCGCC TCGCAGACCG GCCGCAACAT TGCCGTCATC AAAGGCGAAT ACTTTCAGCA ACTGCCCGTC CACAGCATCG ACGACCTGCT CCGCTACGTG CCGGGCGTGG AAATCCAGGC GCGCGGCCCG CAAGGTTCGC AGAGTGACAT TGTGCTGCGC GGCGGCACGT TCCAGCAGGT GCTTGTGATC CTCGACGGCA TTCGCCTGAA CGACCCGAAC ACAGGCCATT TTAATAGCTA CATTCCCATC TCCCCGGCCG AAATCGACCG GATCGAGGTT TTGAAAGGCG CTTCATCCGC ATTGTACGGT TCCGATGCCG TCGGCGGGGT TGTTCATGTT ATTTCAAAGA CATTTGCGGC GCGGCTTGCC GGCGCAGGAA CGGATAATGC TGTACAAAAA ACGCAAGTTA ACGGCGGCGT GAGCGCTGGG GAATATGGGC TGTTTAATGC CAATGTGGGC GCATTTGTAC AGCGGAACAA GCTGGCGGTT TCCGGAGGAT TTTTGTCCAA CAATGCCTCA GGCGTGCAGC AGCGGGGCAT TAAGGGCTAT TTTCACAATA ATACGGCCTC ATTATCGCTG AGCTACGCGA TTTCTCCGAG CTGGAACCTA TCCATCCGCA GTGCCTACGA CCACCGCGAT TTTGCCGCGC AGAACTTTTA CACCGTGCTC AAATCCGACA CCGCGAGCGA AAAAGTGAAA ATGTCGTGGA ACCAGGTGCG GCTGAGTTAC CAGAAAAACA AGACGGCATT TTCGGTAGAC GGTGGATTTA AATCGGTGCA GGACACCTAT TTGTTCAACC CGCATTCCAT TGCCAACAGC AGTAAATCGA AGCTCTGGCA GGGGCTGGCT ACTTTGCAGC AGGGCCTCAC CGCCAGCACG AACCTGATCG CCGGCGTCAA CTTTCAGCAG CGTAATATCC GGTCCAACGA CCGCGGCAAT CACACATTGA ACCAGCTCGC ACCATTCGTT TCGGTGGTAC AAACGATCGG GGAGCATTTT ACAGTGACAC CTTCCGCCCG CCTGGATTGG CGCGAAAACA TTGGCACCGA AGTTTCGCCC CAAATCAATT TATCCTACAA AAAATCGAAC TGGCAGCTGC GGGCGAGTGC AGGAAAAACC ATTCGCGACG CCGATTTCAC GGAACGGTTT AACAACTACG CCAAAACGCT CGTCACCGGC GGCAGCGTCG GCAACCCCGA CCTGAAAGCC GAGCGCTCGA TCAGCTACGA AGCCGGCGCC GACTGGTTCC TGACCAGCAA CCCGACGGCT CAGCTCAAAA TTTCAGGCAC GTTTTTCCAG CGCCTTCAAA AAGACCTGAT CGACTACGTC ACCACACCAT ATGCACAAAT GCCCCGCAAG GATAACCTCT CGCCAACTGG CACATTCGGC CTTGCATTGA ACATCGCCGA AGTAAACACG ACCGGCTTTG AGCTCGATAT TCAATCGGCC AATGCGATTT CGGATAATCA GAAACTGCTC CTCAACGCAG GCCTTACCTG GCTCGATAGC GACAATAAAA GCAATATCCA GTCTTTCTAC CTCTCGTCAC ACGCCCGTTT CCTTGCCAAT TTCTCGGCCA TTTACCAGGT CGGCGCATTC TCAGTGAGTG TGAATGGTTT GTACAAAAAA CGGGCAGAAC GGGAAGCATC GGCCATCGAA GCCACGATTT CTAAAAACTA CTTTTTGCTG AATGCACGCG CCGAATATGC GTTTCTGAAA CGTCAGCTGG GTGTGTTCGT GCAGGCCGAT AATGCATTCG ACAAGCAATA CAGCGATGTG CTCGGCTCGG TAATGCCCGG TCGCTGGTTG ATGGGCGGCG TTCGTTTCAG CTTTTCAAAA TAG
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Protein sequence | MKLHYLSITF FLSCIASPGL AQEISLDPVT VTSSLVEKRA SQTGRNIAVI KGEYFQQLPV HSIDDLLRYV PGVEIQARGP QGSQSDIVLR GGTFQQVLVI LDGIRLNDPN TGHFNSYIPI SPAEIDRIEV LKGASSALYG SDAVGGVVHV ISKTFAARLA GAGTDNAVQK TQVNGGVSAG EYGLFNANVG AFVQRNKLAV SGGFLSNNAS GVQQRGIKGY FHNNTASLSL SYAISPSWNL SIRSAYDHRD FAAQNFYTVL KSDTASEKVK MSWNQVRLSY QKNKTAFSVD GGFKSVQDTY LFNPHSIANS SKSKLWQGLA TLQQGLTAST NLIAGVNFQQ RNIRSNDRGN HTLNQLAPFV SVVQTIGEHF TVTPSARLDW RENIGTEVSP QINLSYKKSN WQLRASAGKT IRDADFTERF NNYAKTLVTG GSVGNPDLKA ERSISYEAGA DWFLTSNPTA QLKISGTFFQ RLQKDLIDYV TTPYAQMPRK DNLSPTGTFG LALNIAEVNT TGFELDIQSA NAISDNQKLL LNAGLTWLDS DNKSNIQSFY LSSHARFLAN FSAIYQVGAF SVSVNGLYKK RAEREASAIE ATISKNYFLL NARAEYAFLK RQLGVFVQAD NAFDKQYSDV LGSVMPGRWL MGGVRFSFSK
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