Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_3282 |
Symbol | |
ID | 8226860 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 4025117 |
End bp | 4028374 |
Gene Length | 3258 bp |
Protein Length | 1085 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644931114 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003087659 |
Protein GI | 255037038 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.260131 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAAAC ATTTACTAGT CCCGCTTTTC CGGGGTGTCA TGATTATGCT GTTTGCAATA GCAGCGCATT TATCGTACGC CCAGGATCAT CAGGTCAAGG GTAAAGTATC CTCCTCTGCT GATGGAACCG GCATTCCCGG CGTAAACGTA CAATTGAAAG GAACGGCTGT GGGTACCGTT ACCGACGCGG ACGGTAGCTA CGCTATCGAC GTAAAAGGTA CCGACGCGGT CCTGGTTTTC TCCTCAATCG GATTAATCAA GAAAGAAGTA ACGGTTGGTA ACCAGTCGAC GATCAACGTT TCGCTCGAAG ACGACATCAA AAACCTGAGC GAAGTGGTGG TAACCGGCTA CGCGGCACAG CGTAAAAAGG ACATTACCGG CGCGGTAACC GTGATCAACC CCAAAGAACT GACTTCCGTG CCCACTGCGA GCGTTACGCA GATGCTGCAA GGGCGCGCTT CGGGTGTAAC CGTCGGAAAC GACAACTCGC CGGGTGGCGG AACGATGGTC CGTATCCGCG GTTTCGGTTC GATTAACAAC AACAGCCCGC TCTACGTGAT CGACGGCGTG CCTACGCAGG GAACGCTGAA CCAGATCAAC CCGAACGACA TCGAGTCGAT GCAGGTACTG AAAGACGCTT CGGCAGCTTC CATTTACGGC GCCCGCGCTG CGAACGGGGT GGTGATCATC ACAACCAAAA AAGGCAAAAC CGGCGCTCCT AACATTACAT TTGACTTCTA CACCGGCACG CAACGTCCCG GCAAGATGCT CGACCTGCTC AATACGAAAG AGCTGGGCCA ATATCTGTAC GAAGCTGACC TCGGCGCTGG TAAAAACCCC TCGGTGACAT CGCCCTCTGC CCAATACAAA TTCGATGAAA ACGGCAACCA GACCGTCGCT GACTACATTT ATCCGAACAT CTACGGCACG CTGCCTTCGG ACATTATCTA TACCAACGAC ATTGCCGATC CAAGGCTTGG TAAAACGGCA TTCAACATCA CCCAGGCCAA CAAAGAAGGA ACCGACTGGC AGGACGTGAT TTTCGATCCG GCACCGATTT CAAACTACCA GATCGGTGCT TCGGGCGGTT CGGAAGCAGC TAAATATGCA CTTTCGGCCA ATTATTTCAC GCAGGACGGT ATTTTGAGAT ACACCAAATA CAAAAGGTAT TCCGTACGCG CCAACACCGA ATTCAAGAAG GGGATAGTAA CTGTGGGTGA GAACTTTACA TTCTCTTACG ACCAGAGACA AGGCATCACC AACAACGACG AAAGCAACCC GATCATGTTC GCGATCCGCG TGCACCCGAT CATCCCGGTG TTCGATATCT CCGGCGGCCC GAAGGCGCTT GGCGGAAACA ACACGTCCGA TTACAATGGA TTTGCAGGAA GCCGCGGCAG TAACCTCGGT AATGCGCCTA ACCCGCTGGC CCGTTTGTAC CGCGAGAAAG ACAACCTGAC CAAAGGCACG CACGCATTCG GTAACGTGTT TGCGCAAGTG GACATTCTTC CGGGGCTTTT TGCACGCACC AGCCTTGGTA TCGAATACAA CCAGTCGAAC CGCTCGGAAT ATTTCCACCG CGACATTGAA GCGGCCGAAG CCCGTAATGC GAACAGCCTG AACGTGATCA ATAATGTGGA CCGTTCGTTC ACCTGGTTCA ACACTTTGAA TTATGCTAAA TCTTTCGGCG TGCATAATTT TAATGTCTTA CTGGGTACAG AAGCTGTGAA GACTTACGCA GCGGAATTCC GGGCGAGCCG GAGCGGATTT GCATTCGACG ACCTCGATTA CCGCTATCTC GATGCAGGTT CGGCGGCCGG TTTGAGCAAT GCAGGGCCCG GCGCCACGGA AAGTGCGCTG TTCTCCCAAT TCGGAAAAAT CAATTATGTG TTCAAAGATC TCGTGCTGGC CGACTTCACA TTGCGCCGCG ATGGCTCATC CCGCTTCTCG GAATCGAACC GCTACGGTAT CTTCCCGGCA TTCTCTCTGG GTTTGCGGAT GACCGAGCTG GCATTTATGA AGCCTGTGAA GTTCGTCGAC GATTTGAAAG TGCGCTTCGG CTGGGGTAAA ACCGGTAACC AGCTCATCCC TAACGTTTAT AATGCTTACA CGCTGTACGC GGCCGATCCG CAGAACAATG CTTACGATAT CAACGGTACC GGTACGTCCA TCGTAGGTGG TTTTGACCTG GTGCAGTTCG GTAACAGCAA TGGCAAATGG GAAACGAATA CCTCTACCAA CATCGGTCTG GACGCGTCGT TGTTCAACAG CAAGCTGGAA GTGGTGCTCG ACCTTTATAA CCGCATTACC TCCGATATGC TAACGCAGAT CGCGATCCCG AGAACAGCCG GTACCGGTAC GATCCCTTAC ACCAACATTG GCGAAGTACG TAACCGCGGG GTGGATTTGG GTATTAATTT CAGAGAGAAA AAAGGCGATT TCAGCTACAT GGTGGGCGTA AACTTTGGCC ACTATAAAAA CGAAGTATTG AAACTGAACA ACGACCCTAA TGCGACGATC TTCGGTTTCA CAACACGTCT GCCGGCCATG TCGGCCACGA AAGCCGGCCT GCCGATCGCT AGCTACTACG GCTACTTTGT GGATGGTGTG ATCAAAGACC AGGCGGAAGC GGATGCCGCA CCGAAATTTG GCTCTTACAC GAGAGAAGGA ACCTTCAAGT TCCGCGATGT GAATGGCGAC GGCGTGATCA CCGCCGCCGA CCGCACGATT ATCGGCAACC CGCACCCCGA CTTTAACTAC GGTATCAATG TGGGCGTTGG CTACAAATGG TTCGATCTGA CCTTATTCGG ACAAGGCGTG CAGGGCAACC AGGTGTTCAA CTACGTGAAA TACTGGACGG ATTTCAACGT ATTCCAGGGT AACCGCTCGA AAACAATGCT TTACGACTCC TGGAAAAAAC CGGGCGACGA TGCCAAGCTG CCCCGCCTGA ACTCGGGTGA CGCTACCAGC CAGCAGGTTT CTTCCTACTT CCTCGAAGAC GGCTCGTATT TCCGCCTGAA AAACATCCAG CTGACCTTCT CGTTGCCGTC TGCCTGGCTG AAAAAAGCGA AACTGGGCTC TGCGCAGATT TACATTCAGG GACAAAACAT GTTTACGCTC ACAAAATATA CCGGTCTGGA CCCGGATATC AACCTGAGAA GATCCGGTGA AAACAACCAG GATACCCACA TGGGCGTCGA TGAAGGCTCC TACCCTGTGG CCAAATCCTA CCTGGCCGGC CTGCGTTTCA GTTTCTAA
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Protein sequence | MNKHLLVPLF RGVMIMLFAI AAHLSYAQDH QVKGKVSSSA DGTGIPGVNV QLKGTAVGTV TDADGSYAID VKGTDAVLVF SSIGLIKKEV TVGNQSTINV SLEDDIKNLS EVVVTGYAAQ RKKDITGAVT VINPKELTSV PTASVTQMLQ GRASGVTVGN DNSPGGGTMV RIRGFGSINN NSPLYVIDGV PTQGTLNQIN PNDIESMQVL KDASAASIYG ARAANGVVII TTKKGKTGAP NITFDFYTGT QRPGKMLDLL NTKELGQYLY EADLGAGKNP SVTSPSAQYK FDENGNQTVA DYIYPNIYGT LPSDIIYTND IADPRLGKTA FNITQANKEG TDWQDVIFDP APISNYQIGA SGGSEAAKYA LSANYFTQDG ILRYTKYKRY SVRANTEFKK GIVTVGENFT FSYDQRQGIT NNDESNPIMF AIRVHPIIPV FDISGGPKAL GGNNTSDYNG FAGSRGSNLG NAPNPLARLY REKDNLTKGT HAFGNVFAQV DILPGLFART SLGIEYNQSN RSEYFHRDIE AAEARNANSL NVINNVDRSF TWFNTLNYAK SFGVHNFNVL LGTEAVKTYA AEFRASRSGF AFDDLDYRYL DAGSAAGLSN AGPGATESAL FSQFGKINYV FKDLVLADFT LRRDGSSRFS ESNRYGIFPA FSLGLRMTEL AFMKPVKFVD DLKVRFGWGK TGNQLIPNVY NAYTLYAADP QNNAYDINGT GTSIVGGFDL VQFGNSNGKW ETNTSTNIGL DASLFNSKLE VVLDLYNRIT SDMLTQIAIP RTAGTGTIPY TNIGEVRNRG VDLGINFREK KGDFSYMVGV NFGHYKNEVL KLNNDPNATI FGFTTRLPAM SATKAGLPIA SYYGYFVDGV IKDQAEADAA PKFGSYTREG TFKFRDVNGD GVITAADRTI IGNPHPDFNY GINVGVGYKW FDLTLFGQGV QGNQVFNYVK YWTDFNVFQG NRSKTMLYDS WKKPGDDAKL PRLNSGDATS QQVSSYFLED GSYFRLKNIQ LTFSLPSAWL KKAKLGSAQI YIQGQNMFTL TKYTGLDPDI NLRRSGENNQ DTHMGVDEGS YPVAKSYLAG LRFSF
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