| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3193 |
|---|
| Symbol | |
|---|
| ID | 8226768 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 3906288 |
|---|
| End bp | 3908588 |
|---|
| Gene Length | 2301 bp |
|---|
| Protein Length | 766 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644931023 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003087571 |
|---|
| Protein GI | 255036950 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.646105 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGAAAAA TCGTTGAAGG CCCCGGCAGT GCGGGCGTCG CATTTGCGAC CGTGGCGCTG
CTGATGCCCA AAGATTCGTC GCTAGCGAAT GGCGCTGTTG CCGATGAGAA TGGTGCATTC
ACCATTGCCG ACGTCACACC CGGCACTTAT CTGCTCCGCG TGACCAACAT GGGTTATCAG
ACGCTCTATC GCCCGAACGT CAAATTAGCG CCCGAAGCCA GCCTGCTCGA CCTCGGAAGC
ATTACCATCC AGGCCGAGGC CCAGAAACTT GCCGAAGTGG TAGTGAAAGG CGAGAAAACG
ATGATTGTGG ACGATATCGA CAAAAAAATC GTCAACATCG GCAAGGACAT GCTCGCGACC
AGCAACAACG TTAGCGACCT GCTCGAAAAA GTCCCGGCCG TTTCACTCGA CGAGAATGGT
AACCCGCAGG TGCGCGGCAA AGGAAATGTG GTGGTGCTCA TCGACGGCAA GCCATCCAAC
CTCTACGGCA GCGACCTCCC GACCATCCTG CAATCGTTCC CCGCGAACCT GATCGAGCGG
ATTGACGTCA TGACCACGCC CTCAGCCAAA TATGAGGGAG AAGGCGCATC CGGTGTGATC
GATATTATCA CGAAAAAGAC GAAAATCCGC GGAATGAATG GAGGAGCGCG GTTGAGCCTC
GGACATAAAA ACAACAATGC GGCTTCCGGG AACCTTAGCT ACAAAGTCGG CAAGTTTGGC
CTGAATGCCT CTTTGAGCGG ACAAACGCGC GCCATGACCT GGGAAAGGGC ATTGAGCCGC
GACAACTTCG TGGGCGAATC GACCTCGCGC CTGCAACAGG ATGGTACCGG CGGCAACAAA
GGCAAAAATG CATTCGGCCG CGTGGGCGTC AATTACGATT TCAACGATCG GAATTCCCTC
GAAGCCGGCG TGAACTACTC GCGCGACAAT AACCGCAACA ACAGCAACAT CCTCAACGAA
ACGACATTCG CTTCGGGCCT CACTCCCGAA ACATTCCGCC GCCTGAACAA TACCAAAGGC
AACGGCAACA ACGTCAATTT CAGCCTTGAC TACCGGTTGA AACTCGCCGA AAAAGATCAC
CAGCTCAATT TCAATTCGAG CTACTCGATC GGCGGCTCGG ACGGCGAATC CTATTTTTCA
CAGGAAAGCA CGATCGACAG CCTGATCCGC AACCAGCAAA ACCTGCGCAA CAACGACCGC
CATTCGCTAT TCCTCAACGC GGATTACACC TGGCCCATTA CGCCCAAAGC GACATTGGAG
GCAGGCGTTC GCTCGCGGAC CAGCTCGAAC GATAACGTCA ATTCCTTCTA TAACCTCGAC
CGCGAGACGA ACAGCTACAT ATTCGACAAC AACATCAGTA ACGTGTTCGG TTACAAGGAC
GCGACCTACA CCGGTTTCAT GACGTTCTCG CAAAAAACCG ACCTCTGGGG CATCCGGGCA
GGTTTGCGCG TGACCGACTA CAACCAGGAT ATCAATCAGA TCAGCCGCAA CCAGGAATTC
AGCGTGCATT TCCTCACGTT GGTACCATCG CTGGCAGTAA CACGGAAGCT GGGAGAATCG
TCGCAATTGA AGCTCAATTA CAGCCGTCGC GTACAGCGCC CCGAGGCCGA CTGGCTCAAC
CCGTTCACCG ACGTGGCCGA TCCGCGTAAC GTCAAAACGG GTAATCCCAA CCTGCGCCCG
GAGTTTACCC ACAAGGCTGA AATGGGTTAT TCCAATTACG AAGCCAATGG CGGCTGGGGA
CCATCGCTGT TCATGGATTA CTCTAATAAC GCCATCACAC AGATCCGCAC CATCGACGAA
GTGGGCGTTT CGCTGACGCG CTATGACAAT GTCGGCCGCG AATTTTCGTA TGGTTTCGAA
ACGGATTTTT CACAAAAACT CTTTGGCGAC GTCCTGAAAA TCAACGGCAG CGGGCGTGTA
TTCCGCAGCG AGGTAGTTTC GGCTATCGCC CAGATCGACA ACCGGACGTG GAGCTATTCG
GGTAACCTGA ATGCATTCAT TTCGCTTCCG GCCGACTTCC GCGCTTCCGC GTACGTGAAT
TACGAAGGCC CGCGTGCGAT CGCACAAGGC ACGCGTGACG GCGTTTTCAT CGCCAATATG
GGTATCCGGA AAGACCTGCT TGAAAAGAAA GCGACGATCT CGTTCAATGT GCAGGACATT
TTCCTTTCAC GGAACTACAA GAGCCAGCTG AATACCGAAA CCTATTCTCA GTCATCTAAC
TGGCACCAGA CCAACCGGCT TGTGAATGTG ACATTCCAAT ACAGATTCGG CAAAATTTCC
GCAAGCGGCG ACGATGCCTG A
|
|---|
| Protein sequence | MGKIVEGPGS AGVAFATVAL LMPKDSSLAN GAVADENGAF TIADVTPGTY LLRVTNMGYQ
TLYRPNVKLA PEASLLDLGS ITIQAEAQKL AEVVVKGEKT MIVDDIDKKI VNIGKDMLAT
SNNVSDLLEK VPAVSLDENG NPQVRGKGNV VVLIDGKPSN LYGSDLPTIL QSFPANLIER
IDVMTTPSAK YEGEGASGVI DIITKKTKIR GMNGGARLSL GHKNNNAASG NLSYKVGKFG
LNASLSGQTR AMTWERALSR DNFVGESTSR LQQDGTGGNK GKNAFGRVGV NYDFNDRNSL
EAGVNYSRDN NRNNSNILNE TTFASGLTPE TFRRLNNTKG NGNNVNFSLD YRLKLAEKDH
QLNFNSSYSI GGSDGESYFS QESTIDSLIR NQQNLRNNDR HSLFLNADYT WPITPKATLE
AGVRSRTSSN DNVNSFYNLD RETNSYIFDN NISNVFGYKD ATYTGFMTFS QKTDLWGIRA
GLRVTDYNQD INQISRNQEF SVHFLTLVPS LAVTRKLGES SQLKLNYSRR VQRPEADWLN
PFTDVADPRN VKTGNPNLRP EFTHKAEMGY SNYEANGGWG PSLFMDYSNN AITQIRTIDE
VGVSLTRYDN VGREFSYGFE TDFSQKLFGD VLKINGSGRV FRSEVVSAIA QIDNRTWSYS
GNLNAFISLP ADFRASAYVN YEGPRAIAQG TRDGVFIANM GIRKDLLEKK ATISFNVQDI
FLSRNYKSQL NTETYSQSSN WHQTNRLVNV TFQYRFGKIS ASGDDA
|
|---|
| |