Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_2954 |
Symbol | |
ID | 8226527 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 3617518 |
End bp | 3618924 |
Gene Length | 1407 bp |
Protein Length | 468 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644930784 |
Product | TPR repeat-containing protein |
Protein accession | YP_003087334 |
Protein GI | 255036713 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.126198 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGGAGA AAAATTTCGG AGAAAGGAAG GATTATATGA AGGAGACACT GCTCAGGTTC GAAAGAATGC TGAAAACCAG CGAGCCGGCC TTTTTCGATT TGGATACTTA CGAAAAGGTT ACAGTACATT ACATAGAAAA AGGGGATTGG GAAAAGGCGT TTAAAGCCTG TGAGATGGGA CTGTCGGATT ACCCCTATTC GCTCGACCTG CTGCTTAGCA TGGTACAGCT GCACGCCAAC CGCGGCGAGC ACGAATCAGC CCTCGAAATT CTGGAACGCG CATCGCTCTT TCACCCCGGC GACATCGAAA TTTCATTCAT GCAGGTGGCG GTGGCCAATA TGATGGGTGA ATATGAAGAG GCGATCGAAA TCCTCGAAAA CCTGCTCGGA AGGGTAGAGG ACCGGGATGA GATCTATTTT CAGATCGGGC AGACTTACCA GAACTGGGGC AAATATGAGG ATGCGATCAA GTATTACAAA CGCTCGCTCC GCAACAATCT GAACAATGAG AATGCGCTTT ACGAACTGGC CCATTGCCTC GACCTGGTAG GGCAGCTGGA AAGCCATTTA GGATATTACA ATGATCTCGT CGATCGTGAC CCGTTCTCGC ATCACGCGTG GTACAACCTC GGCATTGCTT TCAGCAAACT GGAACGCCAC GAGGATGCCG TGCACGCCTA CGAATACGCG ACGCTGATCA AGGACGATTT CGCCTCGGCG TTTTTCCAGC TCGGGAATTC CTACATGAAC CTGGAAAAAT TCGAGGATGC CAAAGTGCAA TACCTGCGCG CGATCGAGCT GGAAGGCAAT CAGCCGGAAA CCTGCTGCTG CCTGGGTACC TGCTACGAGA AACTGGGCGA ATTTGAGACA GCCATTAAAT ACTACCGCCA AACCGTGAAG CTGGACAGCC AGTGGGACGA TGGCTGGTAC GGCCTCGGCA TTTGTTTCAG TGAATTGGGC CGTTGGTATG AAGCCGTAGG TTTCCTGCGG AAAGCGATCC AGATCACCGA ACTGAACCCG GATTACTGGT TGGCATTAGC CGAAACGGAG TTCAAAGTAG GTAATGTCGT TTCGGCATTC GAAGCATTCG AAAAAGCAGC GGAAATCGAG CCTTCGAATC CGGATATCTG GCTGAAATGG TCGTATGTGC TGTTTGAGCA AGGCAACTAC GCCCGCGCTT GCGACTTATT GCAGGCGGCG ATCGACGAAA TGTCGGAAGA GGCAGATTTG TATTACCGGA TGGCCGTTTA CCAGATCCAC GCCGGTCAGT ACCGCGAAGC ATTGGTAAAC CTCGAAATCG GTTTGACGCT CGATTACGAC GGCCACGAGC AGCTTTTCGA CTTTTTCCCA GATCTCGAAA AGCAAAAGGC ATTGTACCGC ATTATCGAAC AATACCGCGA GAAATAA
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Protein sequence | MMEKNFGERK DYMKETLLRF ERMLKTSEPA FFDLDTYEKV TVHYIEKGDW EKAFKACEMG LSDYPYSLDL LLSMVQLHAN RGEHESALEI LERASLFHPG DIEISFMQVA VANMMGEYEE AIEILENLLG RVEDRDEIYF QIGQTYQNWG KYEDAIKYYK RSLRNNLNNE NALYELAHCL DLVGQLESHL GYYNDLVDRD PFSHHAWYNL GIAFSKLERH EDAVHAYEYA TLIKDDFASA FFQLGNSYMN LEKFEDAKVQ YLRAIELEGN QPETCCCLGT CYEKLGEFET AIKYYRQTVK LDSQWDDGWY GLGICFSELG RWYEAVGFLR KAIQITELNP DYWLALAETE FKVGNVVSAF EAFEKAAEIE PSNPDIWLKW SYVLFEQGNY ARACDLLQAA IDEMSEEADL YYRMAVYQIH AGQYREALVN LEIGLTLDYD GHEQLFDFFP DLEKQKALYR IIEQYREK
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